Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08300

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
1,560,311	-				-1.8
1,560,406	+				-0.8
1,561,147	-				-0.5
1,561,174	-				-2.6
1,561,181	+				+1.4
1,561,181	+				+3.9
1,561,182	-				-0.3
1,561,233	+	arsC	LU632_RS08300	0.16	+0.6
1,561,284	+	arsC	LU632_RS08300	0.31	+0.5
1,561,284	+	arsC	LU632_RS08300	0.31	-2.9
1,561,284	+	arsC	LU632_RS08300	0.31	-1.4
1,561,285	-	arsC	LU632_RS08300	0.31	-1.0
1,561,285	-	arsC	LU632_RS08300	0.31	-0.9
1,561,428	-	arsC	LU632_RS08300	0.71	-0.4
1,561,429	+	arsC	LU632_RS08300	0.71	-0.3
1,561,430	-	arsC	LU632_RS08300	0.72	+0.9
1,561,430	-	arsC	LU632_RS08300	0.72	+0.3
1,561,467	+	arsC	LU632_RS08300	0.82	+1.4
1,561,510	+				-1.0
1,561,511	-				-0.1
1,561,511	-				-0.8
1,561,511	-				-1.6
1,561,529	+				+1.7
1,561,529	+				-0.2
1,561,529	+				+0.7
1,561,529	+				-0.1
1,561,529	+				+2.1
1,561,529	+				-2.0
1,561,529	+				+0.4
1,561,530	-				-1.0
1,561,530	-				-1.0
1,561,654	+				-0.2
1,561,660	-				-0.6
1,561,686	+				-1.3
1,561,797	+		LU632_RS08305	0.17	-0.3
1,561,797	+		LU632_RS08305	0.17	+1.7
1,561,797	+		LU632_RS08305	0.17	-2.0
1,561,797	+		LU632_RS08305	0.17	-0.0
1,561,797	+		LU632_RS08305	0.17	+2.1
1,561,797	+		LU632_RS08305	0.17	+2.3
1,561,797	+		LU632_RS08305	0.17	+1.3
1,561,797	+		LU632_RS08305	0.17	+1.0
1,561,797	+		LU632_RS08305	0.17	+1.0
1,561,797	+		LU632_RS08305	0.17	-2.0
1,561,798	-		LU632_RS08305	0.17	-0.0
1,561,798	-		LU632_RS08305	0.17	-2.3
1,561,798	-		LU632_RS08305	0.17	+1.5
1,561,798	-		LU632_RS08305	0.17	-1.0
1,561,914	+		LU632_RS08305	0.25	+0.4
1,561,915	-		LU632_RS08305	0.26	-1.0
1,561,915	-		LU632_RS08305	0.26	-1.5
1,561,943	-		LU632_RS08305	0.27	+1.2
1,561,943	-		LU632_RS08305	0.27	+1.0
1,561,943	-		LU632_RS08305	0.27	+4.4
1,561,943	-		LU632_RS08305	0.27	-1.5
1,562,054	-		LU632_RS08305	0.35	-0.4
1,562,117	-		LU632_RS08305	0.39	+0.5
1,562,150	+		LU632_RS08305	0.42	+4.3
1,562,150	+		LU632_RS08305	0.42	+1.1
1,562,150	+		LU632_RS08305	0.42	+0.4
1,562,150	+		LU632_RS08305	0.42	-1.4
1,562,151	-		LU632_RS08305	0.42	-0.0
1,562,151	-		LU632_RS08305	0.42	-0.1
1,562,292	+		LU632_RS08305	0.51	-0.4
1,562,292	+		LU632_RS08305	0.51	-1.1
1,562,293	-		LU632_RS08305	0.51	+0.2
1,562,371	+		LU632_RS08305	0.57	-0.6
1,562,421	+		LU632_RS08305	0.60	-0.2
1,562,422	-		LU632_RS08305	0.60	+0.8