Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ppk1 and LU632_RS08265 are separated by 156 nucleotides LU632_RS08265 and purN are separated by 59 nucleotides purN and purM overlap by 4 nucleotides
LU632_RS08260: ppk1 - polyphosphate kinase 1, at 1,553,133 to 1,555,193
ppk1
LU632_RS08265: LU632_RS08265 - hypothetical protein, at 1,555,350 to 1,555,499
_RS08265
LU632_RS08270: purN - phosphoribosylglycinamide formyltransferase, at 1,555,559 to 1,556,197
purN
LU632_RS08275: purM - phosphoribosylformylglycinamidine cyclo-ligase, at 1,556,194 to 1,557,234
purM
Position (kb) 1555
1556 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 1554.351 kb on - strand, within ppk1 at 1554.372 kb on + strand, within ppk1 at 1554.526 kb on + strand, within ppk1 at 1554.718 kb on - strand, within ppk1 at 1554.728 kb on - strand, within ppk1 at 1554.728 kb on - strand, within ppk1 at 1554.733 kb on + strand, within ppk1 at 1554.733 kb on + strand, within ppk1 at 1554.734 kb on - strand, within ppk1 at 1554.734 kb on - strand, within ppk1 at 1554.773 kb on + strand, within ppk1 at 1554.774 kb on - strand, within ppk1 at 1554.801 kb on + strand, within ppk1 at 1554.801 kb on + strand, within ppk1 at 1554.802 kb on - strand, within ppk1 at 1554.802 kb on - strand, within ppk1 at 1554.802 kb on - strand, within ppk1 at 1554.813 kb on - strand, within ppk1 at 1555.046 kb on - strand at 1555.069 kb on + strand at 1555.174 kb on + strand at 1555.258 kb on + strand at 1555.259 kb on - strand at 1555.259 kb on - strand at 1555.264 kb on - strand at 1555.415 kb on + strand, within LU632_RS08265 at 1555.415 kb on + strand, within LU632_RS08265 at 1555.417 kb on + strand, within LU632_RS08265 at 1555.417 kb on + strand, within LU632_RS08265 at 1555.418 kb on - strand, within LU632_RS08265 at 1555.418 kb on - strand, within LU632_RS08265 at 1555.418 kb on - strand, within LU632_RS08265 at 1555.431 kb on - strand, within LU632_RS08265 at 1555.543 kb on + strand at 1555.544 kb on - strand at 1555.652 kb on + strand, within purN at 1555.665 kb on + strand, within purN at 1555.714 kb on + strand, within purN at 1555.715 kb on - strand, within purN at 1555.930 kb on + strand, within purN at 1555.930 kb on + strand, within purN at 1555.931 kb on - strand, within purN at 1555.931 kb on - strand, within purN at 1555.933 kb on - strand, within purN at 1555.933 kb on - strand, within purN at 1555.962 kb on + strand, within purN at 1555.962 kb on + strand, within purN at 1555.963 kb on - strand, within purN at 1555.983 kb on - strand, within purN at 1556.278 kb on + strand at 1556.279 kb on - strand at 1556.432 kb on - strand, within purM
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 1,554,351 - ppk1 LU632_RS08260 0.59 +1.0 1,554,372 + ppk1 LU632_RS08260 0.60 -1.4 1,554,526 + ppk1 LU632_RS08260 0.68 -2.6 1,554,718 - ppk1 LU632_RS08260 0.77 -0.0 1,554,728 - ppk1 LU632_RS08260 0.77 +0.2 1,554,728 - ppk1 LU632_RS08260 0.77 +0.6 1,554,733 + ppk1 LU632_RS08260 0.78 -1.8 1,554,733 + ppk1 LU632_RS08260 0.78 +2.0 1,554,734 - ppk1 LU632_RS08260 0.78 +1.0 1,554,734 - ppk1 LU632_RS08260 0.78 +0.6 1,554,773 + ppk1 LU632_RS08260 0.80 -2.0 1,554,774 - ppk1 LU632_RS08260 0.80 -4.1 1,554,801 + ppk1 LU632_RS08260 0.81 -1.0 1,554,801 + ppk1 LU632_RS08260 0.81 -2.0 1,554,802 - ppk1 LU632_RS08260 0.81 -0.5 1,554,802 - ppk1 LU632_RS08260 0.81 -3.4 1,554,802 - ppk1 LU632_RS08260 0.81 +4.6 1,554,813 - ppk1 LU632_RS08260 0.82 -0.0 1,555,046 - -1.1 1,555,069 + -1.3 1,555,174 + -3.6 1,555,258 + -2.2 1,555,259 - -0.3 1,555,259 - +1.9 1,555,264 - +0.4 1,555,415 + LU632_RS08265 0.43 -1.3 1,555,415 + LU632_RS08265 0.43 -1.4 1,555,417 + LU632_RS08265 0.45 +2.4 1,555,417 + LU632_RS08265 0.45 +2.0 1,555,418 - LU632_RS08265 0.45 -0.2 1,555,418 - LU632_RS08265 0.45 +2.4 1,555,418 - LU632_RS08265 0.45 -1.8 1,555,431 - LU632_RS08265 0.54 -0.0 1,555,543 + +0.4 1,555,544 - -0.2 1,555,652 + purN LU632_RS08270 0.15 +0.1 1,555,665 + purN LU632_RS08270 0.17 +1.7 1,555,714 + purN LU632_RS08270 0.24 +2.6 1,555,715 - purN LU632_RS08270 0.24 -0.0 1,555,930 + purN LU632_RS08270 0.58 -0.6 1,555,930 + purN LU632_RS08270 0.58 -0.6 1,555,931 - purN LU632_RS08270 0.58 -0.2 1,555,931 - purN LU632_RS08270 0.58 -1.9 1,555,933 - purN LU632_RS08270 0.59 +0.2 1,555,933 - purN LU632_RS08270 0.59 -0.4 1,555,962 + purN LU632_RS08270 0.63 -0.4 1,555,962 + purN LU632_RS08270 0.63 -2.0 1,555,963 - purN LU632_RS08270 0.63 +2.0 1,555,983 - purN LU632_RS08270 0.66 -1.4 1,556,278 + -5.7 1,556,279 - -1.8 1,556,432 - purM LU632_RS08275 0.23 -2.9
Or see this region's nucleotide sequence