Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07990

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
1,495,296	-	nuoF	LU632_RS07985	0.35	-3.7
1,495,364	+	nuoF	LU632_RS07985	0.40	-3.1
1,495,547	-	nuoF	LU632_RS07985	0.53	-2.8
1,495,661	+	nuoF	LU632_RS07985	0.62	-1.1
1,495,662	-	nuoF	LU632_RS07985	0.62	-2.5
1,495,662	-	nuoF	LU632_RS07985	0.62	+0.9
1,495,894	+	nuoF	LU632_RS07985	0.79	-0.1
1,495,987	-	nuoF	LU632_RS07985	0.86	+0.9
1,496,072	+				-0.7
1,496,073	-				-0.1
1,496,191	+				+0.9
1,496,231	-				-0.1
1,496,231	-				-0.1
1,496,233	+				+1.3
1,496,241	-				-2.1
1,496,288	-				-0.7
1,496,294	-				-4.4
1,496,294	-				-2.1
1,496,304	+				-1.7
1,496,305	-				-0.7
1,496,488	+				+2.3
1,496,515	+				-0.5
1,496,515	+				-1.7
1,496,522	-				-2.4
1,496,826	-	nuoG	LU632_RS07990	0.20	-0.1
1,496,939	-	nuoG	LU632_RS07990	0.24	-2.1
1,496,955	-	nuoG	LU632_RS07990	0.24	-0.1
1,496,996	-	nuoG	LU632_RS07990	0.26	-0.7
1,497,058	-	nuoG	LU632_RS07990	0.28	-0.9
1,497,058	-	nuoG	LU632_RS07990	0.28	-0.9
1,497,741	+	nuoG	LU632_RS07990	0.53	+0.9
1,497,742	-	nuoG	LU632_RS07990	0.53	-2.1
1,497,782	-	nuoG	LU632_RS07990	0.55	-2.2
1,497,782	-	nuoG	LU632_RS07990	0.55	-1.9
1,498,188	-	nuoG	LU632_RS07990	0.70	-1.9
1,498,188	-	nuoG	LU632_RS07990	0.70	-3.9
1,498,188	-	nuoG	LU632_RS07990	0.70	-4.4
1,498,202	+	nuoG	LU632_RS07990	0.70	+2.9
1,498,203	-	nuoG	LU632_RS07990	0.70	-1.1
1,498,261	+	nuoG	LU632_RS07990	0.72	-0.8
1,498,304	-	nuoG	LU632_RS07990	0.74	-0.7
1,498,304	-	nuoG	LU632_RS07990	0.74	-1.1
1,498,305	+	nuoG	LU632_RS07990	0.74	-3.2
1,498,305	+	nuoG	LU632_RS07990	0.74	-2.1
1,498,305	+	nuoG	LU632_RS07990	0.74	-3.4
1,498,305	+	nuoG	LU632_RS07990	0.74	+0.9
1,498,305	+	nuoG	LU632_RS07990	0.74	-0.7
1,498,305	+	nuoG	LU632_RS07990	0.74	-1.7
1,498,305	+	nuoG	LU632_RS07990	0.74	-2.1
1,498,305	+	nuoG	LU632_RS07990	0.74	-1.9
1,498,305	+	nuoG	LU632_RS07990	0.74	-1.4
1,498,306	-	nuoG	LU632_RS07990	0.74	-1.1
1,498,306	-	nuoG	LU632_RS07990	0.74	+0.9
1,498,306	-	nuoG	LU632_RS07990	0.74	-3.9
1,498,306	-	nuoG	LU632_RS07990	0.74	-1.4
1,498,423	+	nuoG	LU632_RS07990	0.78	-0.1
1,498,678	+	nuoG	LU632_RS07990	0.88	-0.3
1,498,678	+	nuoG	LU632_RS07990	0.88	+2.5
1,498,679	-	nuoG	LU632_RS07990	0.88	-2.4
1,498,684	-	nuoG	LU632_RS07990	0.88	-3.2
1,498,731	-	nuoG	LU632_RS07990	0.90	-2.1
1,498,789	+				-1.4
1,498,789	+				-1.9
1,498,789	+				-0.7
1,498,802	+				-1.4
1,498,803	-				-1.1
1,498,803	-				+0.9
1,499,066	+				-0.1
1,499,346	+	nuoH	LU632_RS07995	0.34	+0.9
1,499,346	+	nuoH	LU632_RS07995	0.34	-1.7
1,499,392	+	nuoH	LU632_RS07995	0.39	-2.7
1,499,431	+	nuoH	LU632_RS07995	0.43	-0.4
1,499,432	-	nuoH	LU632_RS07995	0.43	-1.1
1,499,442	-	nuoH	LU632_RS07995	0.44	-1.1
1,499,734	+	nuoH	LU632_RS07995	0.74	-2.2
1,499,735	-	nuoH	LU632_RS07995	0.74	-1.9
1,499,735	-	nuoH	LU632_RS07995	0.74	-2.0
1,499,996	+				+0.1
1,499,997	-				-4.0
1,500,010	-				-0.1