Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06625

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
1,271,212	+				-1.7
1,271,212	+				-0.7
1,271,380	+				-3.9
1,271,417	+				-3.0
1,271,422	-				+0.9
1,271,422	-				-1.1
1,271,495	-				-1.4
1,271,741	-				-2.5
1,271,759	+				+0.9
1,271,775	-				-3.2
1,271,814	-				-0.8
1,271,814	-				-2.1
1,271,834	-				+1.2
1,271,834	-				+0.7
1,271,939	+				-2.1
1,271,982	+				-1.9
1,272,060	-				-2.1
1,272,094	-				+1.9
1,272,094	-				-1.9
1,272,159	+				+0.6
1,272,306	+	cysK	LU632_RS06625	0.16	+0.9
1,272,306	+	cysK	LU632_RS06625	0.16	+1.4
1,272,372	-	cysK	LU632_RS06625	0.23	+3.5
1,272,420	-	cysK	LU632_RS06625	0.28	-1.9
1,272,492	-	cysK	LU632_RS06625	0.35	-2.9
1,272,524	+	cysK	LU632_RS06625	0.38	+0.9
1,272,524	+	cysK	LU632_RS06625	0.38	-2.2
1,272,540	-	cysK	LU632_RS06625	0.40	-2.2
1,272,629	+	cysK	LU632_RS06625	0.49	-0.2
1,272,630	-	cysK	LU632_RS06625	0.49	+1.2
1,272,809	+	cysK	LU632_RS06625	0.68	+0.4
1,272,886	+	cysK	LU632_RS06625	0.76	+0.7
1,272,899	+	cysK	LU632_RS06625	0.77	+0.0
1,272,900	-	cysK	LU632_RS06625	0.77	-1.4
1,272,900	-	cysK	LU632_RS06625	0.77	-2.8
1,272,906	-	cysK	LU632_RS06625	0.78	-0.1
1,272,977	+	cysK	LU632_RS06625	0.85	+3.4
1,272,978	-	cysK	LU632_RS06625	0.85	-0.7
1,273,002	-	cysK	LU632_RS06625	0.88	+0.9
1,273,079	+				+1.2
1,273,100	+				-1.1
1,273,100	+				+1.6
1,273,108	+				-1.4
1,273,138	+				+0.3
1,273,139	-				-0.8
1,273,201	+				+1.0
1,273,209	+				+1.3
1,273,209	+				+1.5
1,273,209	+				-0.1
1,273,209	+				-0.3
1,273,209	+				-0.2
1,273,209	+				+1.1
1,273,209	+				+0.9
1,273,209	+				-0.9
1,273,209	+				-1.1
1,273,209	+				-2.1
1,273,209	+				-0.2
1,273,209	+				-1.1
1,273,209	+				-0.3
1,273,210	-				+0.9
1,273,210	-				-1.0
1,273,210	-				+0.3
1,273,210	-				-0.1
1,273,210	-				-0.5
1,273,213	+				+0.3
1,273,213	+				+0.7
1,273,231	+				+0.8
1,273,242	+				+1.1
1,273,243	-				+0.5
1,273,245	-				+1.2
1,273,266	-				+1.7
1,273,271	-				-0.1
1,273,277	-				+0.3
1,273,396	+	cysZ	LU632_RS06630	0.19	+1.3
1,273,455	+	cysZ	LU632_RS06630	0.27	+1.4
1,273,537	+	cysZ	LU632_RS06630	0.38	-0.6
1,273,543	-	cysZ	LU632_RS06630	0.38	+1.6
1,273,544	+	cysZ	LU632_RS06630	0.39	+1.2
1,273,544	+	cysZ	LU632_RS06630	0.39	+0.9
1,273,575	+	cysZ	LU632_RS06630	0.43	+0.9
1,273,576	-	cysZ	LU632_RS06630	0.43	-0.1
1,273,671	-	cysZ	LU632_RS06630	0.55	+0.9
1,273,691	+	cysZ	LU632_RS06630	0.58	-0.8
1,273,792	-	cysZ	LU632_RS06630	0.71	+0.1
1,273,792	-	cysZ	LU632_RS06630	0.71	-1.9
1,273,997	-				-0.7
1,274,026	-				-0.5
1,274,029	+				-0.0
1,274,029	+				+0.3
1,274,030	-				-2.0
1,274,051	+				-0.7
1,274,052	-				+0.9
1,274,052	-				-2.7
1,274,063	-				+0.3