Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06605

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
1,267,874	-		LU632_RS06600	0.52	+0.3
1,267,901	-		LU632_RS06600	0.54	-1.1
1,267,901	-		LU632_RS06600	0.54	-1.9
1,267,953	+		LU632_RS06600	0.59	+0.0
1,268,063	+		LU632_RS06600	0.70	-0.1
1,268,088	+		LU632_RS06600	0.73	+0.9
1,268,088	+		LU632_RS06600	0.73	+0.6
1,268,088	+		LU632_RS06600	0.73	-0.7
1,268,089	-		LU632_RS06600	0.73	-0.2
1,268,089	-		LU632_RS06600	0.73	+0.4
1,268,089	-		LU632_RS06600	0.73	-0.5
1,268,089	-		LU632_RS06600	0.73	+6.1
1,268,179	+		LU632_RS06600	0.82	+0.6
1,268,179	+		LU632_RS06600	0.82	+1.2
1,268,180	-		LU632_RS06600	0.82	-0.9
1,268,180	-		LU632_RS06600	0.82	-0.1
1,268,180	-		LU632_RS06600	0.82	+0.9
1,268,183	+		LU632_RS06600	0.82	-1.4
1,268,184	-		LU632_RS06600	0.82	-0.4
1,268,326	-				-1.2
1,268,345	+				-1.9
1,268,359	-				+1.7
1,268,359	-				-0.7
1,268,381	+				-0.7
1,268,388	+				+0.0
1,268,414	-				-0.6
1,268,486	+				+0.1
1,268,528	+				+0.4
1,268,528	+				-2.7
1,268,577	+				-1.7
1,268,628	-				+0.4
1,268,628	-				-0.2
1,268,628	-				-1.2
1,268,633	-				-0.8
1,268,633	-				-1.5
1,268,644	-				-2.2
1,268,678	+		LU632_RS06605	0.14	-2.5
1,269,089	+	crr	LU632_RS06610	0.16	-1.1
1,269,099	-	crr	LU632_RS06610	0.18	-2.4
1,269,318	-	crr	LU632_RS06610	0.61	-1.1
1,269,318	-	crr	LU632_RS06610	0.61	-1.1
1,269,318	-	crr	LU632_RS06610	0.61	-1.1
1,269,409	-	crr	LU632_RS06610	0.79	-3.8
1,269,523	+				-0.7
1,269,696	+				-1.4
1,269,746	-	ptsI	LU632_RS06615	0.11	-3.2
1,269,750	+	ptsI	LU632_RS06615	0.11	-1.9
1,269,751	-	ptsI	LU632_RS06615	0.11	-1.4
1,269,751	-	ptsI	LU632_RS06615	0.11	-1.1
1,269,863	+	ptsI	LU632_RS06615	0.18	-3.9
1,269,864	-	ptsI	LU632_RS06615	0.18	-3.5
1,269,877	-	ptsI	LU632_RS06615	0.19	-4.0
1,269,906	+	ptsI	LU632_RS06615	0.20	-3.1
1,269,907	-	ptsI	LU632_RS06615	0.20	-1.1
1,269,907	-	ptsI	LU632_RS06615	0.20	-1.1
1,269,907	-	ptsI	LU632_RS06615	0.20	-1.1
1,269,907	-	ptsI	LU632_RS06615	0.20	-4.5
1,269,908	+	ptsI	LU632_RS06615	0.20	-1.9
1,269,908	+	ptsI	LU632_RS06615	0.20	-3.4