Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS06335 and barA are separated by 42 nucleotides barA and rlmD are separated by 112 nucleotides
LU632_RS06335: LU632_RS06335 - glycerate kinase, at 1,214,191 to 1,215,336
_RS06335
LU632_RS06340: barA - two-component sensor histidine kinase BarA, at 1,215,379 to 1,218,106
barA
LU632_RS06345: rlmD - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 1,218,219 to 1,219,556
rlmD
Position (kb) 1215
1216
1217
1218
1219 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1214.420 kb on - strand, within LU632_RS06335 at 1214.450 kb on - strand, within LU632_RS06335 at 1214.547 kb on + strand, within LU632_RS06335 at 1214.648 kb on + strand, within LU632_RS06335 at 1214.697 kb on - strand, within LU632_RS06335 at 1214.697 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1215.122 kb on + strand, within LU632_RS06335 at 1215.127 kb on - strand, within LU632_RS06335 at 1215.134 kb on - strand, within LU632_RS06335 at 1215.139 kb on - strand, within LU632_RS06335 at 1215.153 kb on + strand, within LU632_RS06335 at 1215.153 kb on + strand, within LU632_RS06335 at 1215.154 kb on - strand, within LU632_RS06335 at 1215.294 kb on + strand at 1215.334 kb on + strand at 1215.335 kb on - strand at 1216.035 kb on + strand, within barA at 1216.036 kb on - strand, within barA at 1216.819 kb on + strand, within barA at 1216.822 kb on + strand, within barA at 1217.074 kb on + strand, within barA at 1217.418 kb on - strand, within barA at 1217.422 kb on + strand, within barA at 1217.587 kb on - strand, within barA at 1217.746 kb on + strand, within barA at 1218.107 kb on - strand at 1218.107 kb on - strand at 1218.118 kb on - strand at 1218.171 kb on - strand at 1218.171 kb on - strand at 1218.171 kb on - strand at 1218.196 kb on + strand at 1218.197 kb on - strand at 1218.217 kb on + strand at 1218.584 kb on - strand, within rlmD at 1218.590 kb on + strand, within rlmD at 1218.590 kb on + strand, within rlmD at 1218.590 kb on + strand, within rlmD at 1218.591 kb on - strand, within rlmD at 1218.591 kb on - strand, within rlmD at 1218.642 kb on + strand, within rlmD at 1218.642 kb on + strand, within rlmD at 1218.642 kb on + strand, within rlmD at 1218.716 kb on + strand, within rlmD at 1218.716 kb on + strand, within rlmD at 1218.717 kb on - strand, within rlmD at 1218.746 kb on + strand, within rlmD at 1218.746 kb on + strand, within rlmD at 1218.746 kb on + strand, within rlmD at 1218.754 kb on + strand, within rlmD at 1218.834 kb on - strand, within rlmD at 1218.914 kb on + strand, within rlmD at 1218.955 kb on + strand, within rlmD at 1219.029 kb on - strand, within rlmD at 1219.079 kb on - strand, within rlmD at 1219.089 kb on - strand, within rlmD
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 1,214,420 - LU632_RS06335 0.20 -4.4 1,214,450 - LU632_RS06335 0.23 -2.1 1,214,547 + LU632_RS06335 0.31 -3.0 1,214,648 + LU632_RS06335 0.40 -0.8 1,214,697 - LU632_RS06335 0.44 -2.2 1,214,697 - LU632_RS06335 0.44 -1.1 1,214,913 - LU632_RS06335 0.63 -2.1 1,214,913 - LU632_RS06335 0.63 -1.2 1,214,913 - LU632_RS06335 0.63 -1.9 1,214,913 - LU632_RS06335 0.63 -1.1 1,214,913 - LU632_RS06335 0.63 -3.5 1,215,122 + LU632_RS06335 0.81 -0.8 1,215,127 - LU632_RS06335 0.82 -0.9 1,215,134 - LU632_RS06335 0.82 -1.4 1,215,139 - LU632_RS06335 0.83 -3.1 1,215,153 + LU632_RS06335 0.84 -1.9 1,215,153 + LU632_RS06335 0.84 -1.9 1,215,154 - LU632_RS06335 0.84 -0.4 1,215,294 + +0.9 1,215,334 + -0.8 1,215,335 - -0.4 1,216,035 + barA LU632_RS06340 0.24 +1.0 1,216,036 - barA LU632_RS06340 0.24 +0.4 1,216,819 + barA LU632_RS06340 0.53 -1.7 1,216,822 + barA LU632_RS06340 0.53 -0.2 1,217,074 + barA LU632_RS06340 0.62 -0.0 1,217,418 - barA LU632_RS06340 0.75 -1.4 1,217,422 + barA LU632_RS06340 0.75 +1.0 1,217,587 - barA LU632_RS06340 0.81 +3.0 1,217,746 + barA LU632_RS06340 0.87 +4.1 1,218,107 - -0.4 1,218,107 - +0.4 1,218,118 - -0.6 1,218,171 - -1.9 1,218,171 - +1.4 1,218,171 - +0.1 1,218,196 + +1.7 1,218,197 - +1.1 1,218,217 + -1.0 1,218,584 - rlmD LU632_RS06345 0.27 -3.0 1,218,590 + rlmD LU632_RS06345 0.28 -0.0 1,218,590 + rlmD LU632_RS06345 0.28 +1.5 1,218,590 + rlmD LU632_RS06345 0.28 -0.2 1,218,591 - rlmD LU632_RS06345 0.28 +0.1 1,218,591 - rlmD LU632_RS06345 0.28 -2.7 1,218,642 + rlmD LU632_RS06345 0.32 +1.2 1,218,642 + rlmD LU632_RS06345 0.32 -0.6 1,218,642 + rlmD LU632_RS06345 0.32 +0.9 1,218,716 + rlmD LU632_RS06345 0.37 -1.0 1,218,716 + rlmD LU632_RS06345 0.37 +0.5 1,218,717 - rlmD LU632_RS06345 0.37 -1.0 1,218,746 + rlmD LU632_RS06345 0.39 -1.0 1,218,746 + rlmD LU632_RS06345 0.39 +1.0 1,218,746 + rlmD LU632_RS06345 0.39 +0.0 1,218,754 + rlmD LU632_RS06345 0.40 -0.7 1,218,834 - rlmD LU632_RS06345 0.46 -1.4 1,218,914 + rlmD LU632_RS06345 0.52 -0.6 1,218,955 + rlmD LU632_RS06345 0.55 -0.6 1,219,029 - rlmD LU632_RS06345 0.61 +0.2 1,219,079 - rlmD LU632_RS06345 0.64 +1.1 1,219,089 - rlmD LU632_RS06345 0.65 -0.3
Or see this region's nucleotide sequence