Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05550

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
1,074,952	+				-0.6
1,074,954	+				+1.5
1,074,978	+				+0.4
1,074,978	+				-0.0
1,075,080	+				+0.8
1,075,106	+				+2.2
1,075,195	+				+1.0
1,075,220	-				-1.0
1,075,281	+				-2.7
1,075,534	+	mscS	LU632_RS05550	0.37	+1.0
1,075,608	-	mscS	LU632_RS05550	0.46	+1.0
1,075,764	-	mscS	LU632_RS05550	0.63	+1.0
1,075,811	-	mscS	LU632_RS05550	0.69	+1.0
1,075,844	-	mscS	LU632_RS05550	0.72	-0.0
1,076,000	+				+2.5
1,076,001	-				+1.0
1,076,001	-				+1.0
1,076,002	+				-0.6
1,076,003	-				+2.5
1,076,040	-				-1.0
1,076,086	-				-0.0
1,076,102	-				+1.3
1,076,894	-				-0.9
1,076,912	+				-2.8
1,076,912	+				-1.0
1,076,951	+		LU632_RS05560	0.11	-1.0
1,076,972	+		LU632_RS05560	0.15	-3.0
1,077,024	+		LU632_RS05560	0.23	+1.1
1,077,024	+		LU632_RS05560	0.23	-1.6
1,077,024	+		LU632_RS05560	0.23	-0.2
1,077,025	-		LU632_RS05560	0.24	-1.6
1,077,025	-		LU632_RS05560	0.24	-1.5
1,077,027	-		LU632_RS05560	0.24	-1.0
1,077,027	-		LU632_RS05560	0.24	-0.8
1,077,027	-		LU632_RS05560	0.24	-0.6
1,077,084	-		LU632_RS05560	0.33	-2.6