Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05295 and LU632_RS05300 overlap by 10 nucleotides LU632_RS05300 and LU632_RS05305 are separated by 37 nucleotides LU632_RS05305 and LU632_RS05310 are separated by 436 nucleotides
LU632_RS05295: LU632_RS05295 - integrating conjugative element protein, at 1,023,592 to 1,023,936
_RS05295
LU632_RS05300: LU632_RS05300 - conjugal transfer protein TraG N-terminal domain-containing protein, at 1,023,927 to 1,024,550
_RS05300
LU632_RS05305: LU632_RS05305 - hypothetical protein, at 1,024,588 to 1,024,875
_RS05305
LU632_RS05310: LU632_RS05310 - hypothetical protein, at 1,025,312 to 1,026,292
_RS05310
Position (kb) 1024
1025 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1024.176 kb on - strand, within LU632_RS05300 at 1024.273 kb on - strand, within LU632_RS05300 at 1024.281 kb on - strand, within LU632_RS05300 at 1024.356 kb on - strand, within LU632_RS05300 at 1024.380 kb on + strand, within LU632_RS05300 at 1024.380 kb on + strand, within LU632_RS05300 at 1024.380 kb on + strand, within LU632_RS05300 at 1024.380 kb on + strand, within LU632_RS05300 at 1024.380 kb on + strand, within LU632_RS05300 at 1024.381 kb on - strand, within LU632_RS05300 at 1024.381 kb on - strand, within LU632_RS05300 at 1024.381 kb on - strand, within LU632_RS05300 at 1024.381 kb on - strand, within LU632_RS05300 at 1024.381 kb on - strand, within LU632_RS05300 at 1024.381 kb on - strand, within LU632_RS05300 at 1024.381 kb on - strand, within LU632_RS05300 at 1024.381 kb on - strand, within LU632_RS05300 at 1024.381 kb on - strand, within LU632_RS05300 at 1024.445 kb on - strand, within LU632_RS05300 at 1024.517 kb on - strand at 1024.521 kb on - strand at 1024.521 kb on - strand at 1024.589 kb on + strand at 1024.608 kb on + strand at 1024.608 kb on + strand at 1024.611 kb on - strand at 1024.613 kb on + strand at 1024.614 kb on - strand at 1024.638 kb on + strand, within LU632_RS05305 at 1024.639 kb on - strand, within LU632_RS05305 at 1024.641 kb on - strand, within LU632_RS05305 at 1024.665 kb on - strand, within LU632_RS05305 at 1024.666 kb on + strand, within LU632_RS05305 at 1024.666 kb on + strand, within LU632_RS05305 at 1024.758 kb on + strand, within LU632_RS05305 at 1024.759 kb on - strand, within LU632_RS05305 at 1024.773 kb on + strand, within LU632_RS05305 at 1024.773 kb on + strand, within LU632_RS05305 at 1024.774 kb on - strand, within LU632_RS05305 at 1024.774 kb on - strand, within LU632_RS05305 at 1024.896 kb on - strand at 1024.896 kb on - strand at 1024.920 kb on - strand at 1025.007 kb on + strand at 1025.008 kb on - strand at 1025.008 kb on - strand at 1025.144 kb on + strand at 1025.159 kb on + strand at 1025.171 kb on + strand at 1025.217 kb on + strand at 1025.308 kb on - strand at 1025.311 kb on + strand at 1025.461 kb on + strand, within LU632_RS05310 at 1025.502 kb on + strand, within LU632_RS05310 at 1025.638 kb on - strand, within LU632_RS05310
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 1,024,176 - LU632_RS05300 0.40 -1.0 1,024,273 - LU632_RS05300 0.55 -1.7 1,024,281 - LU632_RS05300 0.57 -0.2 1,024,356 - LU632_RS05300 0.69 -0.4 1,024,380 + LU632_RS05300 0.73 +1.6 1,024,380 + LU632_RS05300 0.73 +0.7 1,024,380 + LU632_RS05300 0.73 -0.3 1,024,380 + LU632_RS05300 0.73 +0.4 1,024,380 + LU632_RS05300 0.73 +3.0 1,024,381 - LU632_RS05300 0.73 -1.2 1,024,381 - LU632_RS05300 0.73 -1.9 1,024,381 - LU632_RS05300 0.73 +3.2 1,024,381 - LU632_RS05300 0.73 +1.0 1,024,381 - LU632_RS05300 0.73 -2.4 1,024,381 - LU632_RS05300 0.73 -1.4 1,024,381 - LU632_RS05300 0.73 -0.1 1,024,381 - LU632_RS05300 0.73 +1.5 1,024,381 - LU632_RS05300 0.73 +1.0 1,024,445 - LU632_RS05300 0.83 +2.1 1,024,517 - +0.8 1,024,521 - -1.4 1,024,521 - +1.0 1,024,589 + -1.1 1,024,608 + +1.6 1,024,608 + +3.0 1,024,611 - -2.2 1,024,613 + +0.6 1,024,614 - +0.8 1,024,638 + LU632_RS05305 0.17 +0.7 1,024,639 - LU632_RS05305 0.18 +1.6 1,024,641 - LU632_RS05305 0.18 +1.8 1,024,665 - LU632_RS05305 0.27 -1.2 1,024,666 + LU632_RS05305 0.27 -2.0 1,024,666 + LU632_RS05305 0.27 -2.0 1,024,758 + LU632_RS05305 0.59 -1.0 1,024,759 - LU632_RS05305 0.59 -1.7 1,024,773 + LU632_RS05305 0.64 -0.6 1,024,773 + LU632_RS05305 0.64 +0.1 1,024,774 - LU632_RS05305 0.65 -1.0 1,024,774 - LU632_RS05305 0.65 -0.5 1,024,896 - -0.3 1,024,896 - +0.3 1,024,920 - -1.0 1,025,007 + +0.1 1,025,008 - -1.2 1,025,008 - -0.6 1,025,144 + +1.9 1,025,159 + +0.5 1,025,171 + -2.1 1,025,217 + +0.2 1,025,308 - +1.0 1,025,311 + +3.0 1,025,461 + LU632_RS05310 0.15 +0.1 1,025,502 + LU632_RS05310 0.19 -0.4 1,025,638 - LU632_RS05310 0.33 -1.7
Or see this region's nucleotide sequence