Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04735 and LU632_RS04740 are separated by 69 nucleotides LU632_RS04740 and LU632_RS04745 are separated by 52 nucleotides
LU632_RS04735: LU632_RS04735 - fimbria/pilus outer membrane usher protein, at 930,153 to 932,198
_RS04735
LU632_RS04740: LU632_RS04740 - DNA topoisomerase IV subunit B, at 932,268 to 932,570
_RS04740
LU632_RS04745: LU632_RS04745 - IS3 family transposase, at 932,623 to 933,792
_RS04745
Position (kb) 932
933 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 931.570 kb on - strand, within LU632_RS04735 at 931.579 kb on - strand, within LU632_RS04735 at 931.622 kb on + strand, within LU632_RS04735 at 931.704 kb on - strand, within LU632_RS04735 at 931.704 kb on - strand, within LU632_RS04735 at 931.704 kb on - strand, within LU632_RS04735 at 931.707 kb on + strand, within LU632_RS04735 at 931.708 kb on - strand, within LU632_RS04735 at 931.716 kb on - strand, within LU632_RS04735 at 931.743 kb on + strand, within LU632_RS04735 at 931.775 kb on + strand, within LU632_RS04735 at 931.775 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.822 kb on - strand, within LU632_RS04735 at 931.822 kb on - strand, within LU632_RS04735 at 931.848 kb on - strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.907 kb on - strand, within LU632_RS04735 at 931.995 kb on - strand at 932.312 kb on + strand, within LU632_RS04740 at 932.313 kb on - strand, within LU632_RS04740 at 932.555 kb on - strand at 932.578 kb on - strand at 932.578 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 931,570 - LU632_RS04735 0.69 -1.0 931,579 - LU632_RS04735 0.70 +0.7 931,622 + LU632_RS04735 0.72 +0.4 931,704 - LU632_RS04735 0.76 -1.0 931,704 - LU632_RS04735 0.76 -2.2 931,704 - LU632_RS04735 0.76 -2.6 931,707 + LU632_RS04735 0.76 +0.0 931,708 - LU632_RS04735 0.76 -2.0 931,716 - LU632_RS04735 0.76 -1.0 931,743 + LU632_RS04735 0.78 -0.3 931,775 + LU632_RS04735 0.79 -0.1 931,775 + LU632_RS04735 0.79 -1.3 931,821 + LU632_RS04735 0.82 +1.0 931,821 + LU632_RS04735 0.82 -1.0 931,821 + LU632_RS04735 0.82 -0.3 931,821 + LU632_RS04735 0.82 +1.1 931,821 + LU632_RS04735 0.82 -1.3 931,821 + LU632_RS04735 0.82 +0.0 931,822 - LU632_RS04735 0.82 -3.2 931,822 - LU632_RS04735 0.82 +1.0 931,848 - LU632_RS04735 0.83 +1.0 931,906 + LU632_RS04735 0.86 +1.2 931,906 + LU632_RS04735 0.86 +1.0 931,906 + LU632_RS04735 0.86 -1.0 931,907 - LU632_RS04735 0.86 -2.9 931,995 - -1.8 932,312 + LU632_RS04740 0.15 -3.2 932,313 - LU632_RS04740 0.15 +1.0 932,555 - -3.2 932,578 - -0.1 932,578 - +1.0
Or see this region's nucleotide sequence