Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04680 and LU632_RS04685 are separated by 34 nucleotides LU632_RS04685 and LU632_RS04690 are separated by 6 nucleotides LU632_RS04690 and LU632_RS04695 are separated by 161 nucleotides
LU632_RS04680: LU632_RS04680 - IS481 family transposase, at 916,781 to 917,689
_RS04680
LU632_RS04685: LU632_RS04685 - universal stress protein, at 917,724 to 918,089
_RS04685
LU632_RS04690: LU632_RS04690 - IclR family transcriptional regulator, at 918,096 to 918,878
_RS04690
LU632_RS04695: LU632_RS04695 - MFS transporter, at 919,040 to 920,632
_RS04695
Position (kb) 917
918
919 Strain fitness (log2 ratio) -2
-1
0
1
2 at 917.744 kb on + strand at 917.811 kb on + strand, within LU632_RS04685 at 917.811 kb on + strand, within LU632_RS04685 at 917.938 kb on - strand, within LU632_RS04685 at 917.938 kb on - strand, within LU632_RS04685 at 917.985 kb on + strand, within LU632_RS04685 at 917.985 kb on + strand, within LU632_RS04685 at 917.985 kb on + strand, within LU632_RS04685 at 917.985 kb on + strand, within LU632_RS04685 at 917.986 kb on - strand, within LU632_RS04685 at 917.986 kb on - strand, within LU632_RS04685 at 917.992 kb on - strand, within LU632_RS04685 at 918.120 kb on + strand at 918.207 kb on + strand, within LU632_RS04690 at 918.231 kb on + strand, within LU632_RS04690 at 918.353 kb on + strand, within LU632_RS04690 at 918.354 kb on - strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.508 kb on + strand, within LU632_RS04690 at 918.509 kb on - strand, within LU632_RS04690 at 918.509 kb on - strand, within LU632_RS04690 at 918.640 kb on - strand, within LU632_RS04690 at 918.889 kb on + strand at 918.890 kb on - strand at 918.890 kb on - strand at 918.911 kb on + strand at 918.931 kb on + strand at 918.932 kb on - strand at 918.932 kb on - strand at 918.975 kb on - strand at 918.975 kb on - strand at 918.977 kb on + strand at 919.039 kb on + strand at 919.054 kb on + strand at 919.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 917,744 + +1.6 917,811 + LU632_RS04685 0.24 -0.0 917,811 + LU632_RS04685 0.24 -0.0 917,938 - LU632_RS04685 0.58 +1.3 917,938 - LU632_RS04685 0.58 +1.3 917,985 + LU632_RS04685 0.71 -1.3 917,985 + LU632_RS04685 0.71 -1.7 917,985 + LU632_RS04685 0.71 -0.9 917,985 + LU632_RS04685 0.71 +0.6 917,986 - LU632_RS04685 0.72 -0.6 917,986 - LU632_RS04685 0.72 -0.6 917,992 - LU632_RS04685 0.73 +1.3 918,120 + +0.8 918,207 + LU632_RS04690 0.14 +0.5 918,231 + LU632_RS04690 0.17 +1.9 918,353 + LU632_RS04690 0.33 -2.2 918,354 - LU632_RS04690 0.33 -2.0 918,508 + LU632_RS04690 0.53 -0.2 918,508 + LU632_RS04690 0.53 +0.6 918,508 + LU632_RS04690 0.53 -2.3 918,508 + LU632_RS04690 0.53 -1.0 918,509 - LU632_RS04690 0.53 +0.8 918,509 - LU632_RS04690 0.53 +1.8 918,640 - LU632_RS04690 0.69 -1.3 918,889 + +2.0 918,890 - -1.3 918,890 - +1.4 918,911 + -0.8 918,931 + +1.0 918,932 - -1.0 918,932 - -0.6 918,975 - -2.0 918,975 - -2.1 918,977 + -2.6 919,039 + +1.4 919,054 + -2.3 919,073 - +0.8
Or see this region's nucleotide sequence