Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ulaD and LU632_RS04275 are separated by 2 nucleotides LU632_RS04275 and araD overlap by 4 nucleotides araD and LU632_RS04285 are separated by 89 nucleotides
LU632_RS04270: ulaD - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 849,678 to 850,340
ulaD
LU632_RS04275: LU632_RS04275 - L-ribulose-5-phosphate 3-epimerase, at 850,343 to 851,200
_RS04275
LU632_RS04280: araD - L-ribulose-5-phosphate 4-epimerase, at 851,197 to 851,895
araD
LU632_RS04285: LU632_RS04285 - IS5 family transposase, at 851,985 to 852,801
_RS04285
Position (kb) 851
852 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 850.235 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.241 kb on - strand, within ulaD at 850.268 kb on + strand, within ulaD at 850.325 kb on + strand at 850.337 kb on - strand at 850.338 kb on + strand at 850.338 kb on + strand at 850.338 kb on + strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.339 kb on - strand at 850.365 kb on + strand at 850.365 kb on + strand at 850.366 kb on - strand at 850.366 kb on - strand at 850.368 kb on - strand at 850.368 kb on - strand at 850.368 kb on - strand at 850.455 kb on + strand, within LU632_RS04275 at 850.548 kb on + strand, within LU632_RS04275 at 850.592 kb on - strand, within LU632_RS04275 at 850.622 kb on + strand, within LU632_RS04275 at 850.701 kb on - strand, within LU632_RS04275 at 850.701 kb on - strand, within LU632_RS04275 at 850.703 kb on + strand, within LU632_RS04275 at 850.819 kb on + strand, within LU632_RS04275 at 850.834 kb on + strand, within LU632_RS04275 at 850.834 kb on + strand, within LU632_RS04275 at 850.881 kb on + strand, within LU632_RS04275 at 850.882 kb on - strand, within LU632_RS04275 at 850.882 kb on - strand, within LU632_RS04275 at 851.256 kb on + strand at 851.256 kb on + strand at 851.257 kb on - strand at 851.257 kb on - strand at 851.341 kb on + strand, within araD at 851.364 kb on + strand, within araD at 851.364 kb on + strand, within araD at 851.365 kb on - strand, within araD at 851.365 kb on - strand, within araD at 851.399 kb on + strand, within araD at 851.485 kb on - strand, within araD at 851.485 kb on - strand, within araD at 851.621 kb on - strand, within araD at 851.626 kb on + strand, within araD at 851.627 kb on - strand, within araD at 851.627 kb on - strand, within araD at 851.647 kb on - strand, within araD at 851.648 kb on + strand, within araD at 851.649 kb on - strand, within araD at 851.649 kb on - strand, within araD at 851.670 kb on + strand, within araD at 851.730 kb on + strand, within araD at 851.762 kb on + strand, within araD at 851.763 kb on - strand, within araD at 851.782 kb on + strand, within araD at 851.782 kb on + strand, within araD at 851.782 kb on + strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.855 kb on - strand at 851.882 kb on - strand at 851.896 kb on + strand at 851.899 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.834 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 850,235 - ulaD LU632_RS04270 0.84 -3.8 850,241 - ulaD LU632_RS04270 0.85 -2.5 850,241 - ulaD LU632_RS04270 0.85 -2.7 850,241 - ulaD LU632_RS04270 0.85 -2.9 850,268 + ulaD LU632_RS04270 0.89 -3.7 850,325 + -3.3 850,337 - +0.4 850,338 + +0.6 850,338 + -2.0 850,338 + -0.8 850,339 - -1.8 850,339 - -2.7 850,339 - -1.0 850,339 - -2.7 850,365 + -0.2 850,365 + -1.2 850,366 - -3.0 850,366 - -0.3 850,368 - -1.5 850,368 - -2.9 850,368 - -1.3 850,455 + LU632_RS04275 0.13 -1.3 850,548 + LU632_RS04275 0.24 -1.0 850,592 - LU632_RS04275 0.29 +1.3 850,622 + LU632_RS04275 0.33 +0.5 850,701 - LU632_RS04275 0.42 -1.0 850,701 - LU632_RS04275 0.42 -3.1 850,703 + LU632_RS04275 0.42 -2.8 850,819 + LU632_RS04275 0.55 -2.5 850,834 + LU632_RS04275 0.57 -2.3 850,834 + LU632_RS04275 0.57 -2.6 850,881 + LU632_RS04275 0.63 -3.8 850,882 - LU632_RS04275 0.63 -1.0 850,882 - LU632_RS04275 0.63 -2.7 851,256 + -5.1 851,256 + -4.0 851,257 - -2.3 851,257 - -3.9 851,341 + araD LU632_RS04280 0.21 -2.2 851,364 + araD LU632_RS04280 0.24 -4.1 851,364 + araD LU632_RS04280 0.24 -0.6 851,365 - araD LU632_RS04280 0.24 -4.6 851,365 - araD LU632_RS04280 0.24 -2.3 851,399 + araD LU632_RS04280 0.29 -0.0 851,485 - araD LU632_RS04280 0.41 -2.6 851,485 - araD LU632_RS04280 0.41 -1.0 851,621 - araD LU632_RS04280 0.61 -1.2 851,626 + araD LU632_RS04280 0.61 -2.3 851,627 - araD LU632_RS04280 0.62 -1.8 851,627 - araD LU632_RS04280 0.62 -3.2 851,647 - araD LU632_RS04280 0.64 -3.7 851,648 + araD LU632_RS04280 0.65 -0.0 851,649 - araD LU632_RS04280 0.65 -1.0 851,649 - araD LU632_RS04280 0.65 -2.5 851,670 + araD LU632_RS04280 0.68 -0.6 851,730 + araD LU632_RS04280 0.76 -2.2 851,762 + araD LU632_RS04280 0.81 -1.3 851,763 - araD LU632_RS04280 0.81 -3.5 851,782 + araD LU632_RS04280 0.84 -3.0 851,782 + araD LU632_RS04280 0.84 -2.0 851,782 + araD LU632_RS04280 0.84 -1.6 851,783 - araD LU632_RS04280 0.84 -3.3 851,783 - araD LU632_RS04280 0.84 -2.7 851,783 - araD LU632_RS04280 0.84 -5.5 851,783 - araD LU632_RS04280 0.84 -1.6 851,783 - araD LU632_RS04280 0.84 -2.3 851,855 - -2.3 851,882 - -3.7 851,896 + +2.2 851,899 + -1.6 852,832 + +0.0 852,832 + +3.0 852,832 + -3.7 852,832 + -1.6 852,832 + -3.2 852,832 + -0.5 852,834 + +2.0
Or see this region's nucleotide sequence