Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04080 and LU632_RS04085 are separated by 209 nucleotides LU632_RS04085 and LU632_RS04090 are separated by 221 nucleotides
LU632_RS04080: LU632_RS04080 - IS256 family transposase, at 813,174 to 814,308
_RS04080
LU632_RS04085: LU632_RS04085 - hypothetical protein, at 814,518 to 814,868
_RS04085
LU632_RS04090: LU632_RS04090 - IS3 family transposase, at 815,090 to 815,859
_RS04090
Position (kb) 814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 814.383 kb on + strand at 814.477 kb on + strand at 814.519 kb on + strand at 814.606 kb on - strand, within LU632_RS04085 at 814.606 kb on - strand, within LU632_RS04085 at 814.696 kb on + strand, within LU632_RS04085 at 814.849 kb on - strand at 814.850 kb on + strand at 814.851 kb on - strand at 814.870 kb on + strand at 814.871 kb on - strand at 814.886 kb on - strand at 814.912 kb on + strand at 814.915 kb on + strand at 814.916 kb on - strand at 814.935 kb on + strand at 814.956 kb on + strand at 815.074 kb on + strand at 815.163 kb on + strand at 815.178 kb on + strand, within LU632_RS04090 at 815.178 kb on + strand, within LU632_RS04090 at 815.179 kb on - strand, within LU632_RS04090 at 815.182 kb on + strand, within LU632_RS04090 at 815.182 kb on + strand, within LU632_RS04090 at 815.182 kb on + strand, within LU632_RS04090 at 815.183 kb on - strand, within LU632_RS04090 at 815.183 kb on - strand, within LU632_RS04090 at 815.233 kb on + strand, within LU632_RS04090 at 815.294 kb on - strand, within LU632_RS04090 at 815.332 kb on - strand, within LU632_RS04090 at 815.429 kb on - strand, within LU632_RS04090 at 815.491 kb on + strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.588 kb on - strand, within LU632_RS04090 at 815.690 kb on + strand, within LU632_RS04090 at 815.755 kb on - strand, within LU632_RS04090 at 815.828 kb on + strand at 815.828 kb on + strand at 815.829 kb on - strand at 815.829 kb on - strand at 815.829 kb on - strand at 815.829 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 814,383 + +1.3 814,477 + +1.6 814,519 + -0.3 814,606 - LU632_RS04085 0.25 +1.8 814,606 - LU632_RS04085 0.25 +0.3 814,696 + LU632_RS04085 0.51 +0.2 814,849 - -1.3 814,850 + -0.3 814,851 - +1.0 814,870 + +1.2 814,871 - -1.8 814,886 - +0.2 814,912 + -0.5 814,915 + +0.7 814,916 - +0.4 814,935 + +0.7 814,956 + -0.3 815,074 + +0.5 815,163 + -1.0 815,178 + LU632_RS04090 0.11 +0.4 815,178 + LU632_RS04090 0.11 +0.3 815,179 - LU632_RS04090 0.12 -1.6 815,182 + LU632_RS04090 0.12 +0.3 815,182 + LU632_RS04090 0.12 -2.0 815,182 + LU632_RS04090 0.12 -1.0 815,183 - LU632_RS04090 0.12 +1.2 815,183 - LU632_RS04090 0.12 -0.9 815,233 + LU632_RS04090 0.19 -1.0 815,294 - LU632_RS04090 0.26 -0.6 815,332 - LU632_RS04090 0.31 +1.3 815,429 - LU632_RS04090 0.44 +1.1 815,491 + LU632_RS04090 0.52 -1.0 815,517 - LU632_RS04090 0.55 +3.0 815,517 - LU632_RS04090 0.55 -0.5 815,517 - LU632_RS04090 0.55 -1.2 815,580 + LU632_RS04090 0.64 -0.6 815,580 + LU632_RS04090 0.64 +0.9 815,580 + LU632_RS04090 0.64 -2.3 815,588 - LU632_RS04090 0.65 +1.0 815,690 + LU632_RS04090 0.78 -1.3 815,755 - LU632_RS04090 0.86 +2.8 815,828 + +2.0 815,828 + +0.9 815,829 - -1.0 815,829 - -0.5 815,829 - -0.6 815,829 - -3.0
Or see this region's nucleotide sequence