Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03435

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03420 and LU632_RS03425 are separated by 163 nucleotidesLU632_RS03425 and LU632_RS03430 are separated by 201 nucleotidesLU632_RS03430 and LU632_RS03435 overlap by 8 nucleotidesLU632_RS03435 and LU632_RS03440 are separated by 396 nucleotidesLU632_RS03440 and LU632_RS03445 are separated by 18 nucleotides LU632_RS03420: LU632_RS03420 - hypothetical protein, at 699,167 to 699,355 _RS03420 LU632_RS03425: LU632_RS03425 - hypothetical protein, at 699,519 to 699,755 _RS03425 LU632_RS03430: LU632_RS03430 - DUF4222 domain-containing protein, at 699,957 to 700,199 _RS03430 LU632_RS03435: LU632_RS03435 - TOPRIM and DUF927 domain-containing protein, at 700,192 to 702,996 _RS03435 LU632_RS03440: LU632_RS03440 - single-stranded DNA-binding protein, at 703,393 to 703,836 _RS03440 LU632_RS03445: LU632_RS03445 - ProQ/FinO family protein, at 703,855 to 704,322 _RS03445 Position (kb) 700 701 702 703Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 699.484 kb on + strandat 699.521 kb on - strandat 699.546 kb on - strand, within LU632_RS03425at 699.546 kb on - strand, within LU632_RS03425at 699.563 kb on - strand, within LU632_RS03425at 699.566 kb on + strand, within LU632_RS03425at 699.566 kb on + strand, within LU632_RS03425at 699.622 kb on + strand, within LU632_RS03425at 699.622 kb on + strand, within LU632_RS03425at 699.622 kb on + strand, within LU632_RS03425at 699.622 kb on + strand, within LU632_RS03425at 699.622 kb on + strand, within LU632_RS03425at 699.622 kb on + strand, within LU632_RS03425at 699.623 kb on - strand, within LU632_RS03425at 699.623 kb on - strand, within LU632_RS03425at 699.759 kb on + strandat 699.826 kb on - strandat 699.858 kb on - strandat 699.858 kb on - strandat 699.885 kb on + strandat 699.886 kb on - strandat 700.026 kb on - strand, within LU632_RS03430at 700.067 kb on + strand, within LU632_RS03430at 700.068 kb on - strand, within LU632_RS03430at 700.068 kb on - strand, within LU632_RS03430at 700.068 kb on - strand, within LU632_RS03430at 700.072 kb on + strand, within LU632_RS03430at 700.073 kb on - strand, within LU632_RS03430at 700.073 kb on - strand, within LU632_RS03430at 700.091 kb on + strand, within LU632_RS03430at 700.438 kb on - strandat 700.587 kb on + strand, within LU632_RS03435at 700.587 kb on + strand, within LU632_RS03435at 700.628 kb on - strand, within LU632_RS03435at 700.629 kb on + strand, within LU632_RS03435at 700.630 kb on - strand, within LU632_RS03435at 700.630 kb on - strand, within LU632_RS03435at 700.635 kb on - strand, within LU632_RS03435at 700.714 kb on - strand, within LU632_RS03435at 700.725 kb on - strand, within LU632_RS03435at 700.727 kb on + strand, within LU632_RS03435at 700.727 kb on + strand, within LU632_RS03435at 700.728 kb on - strand, within LU632_RS03435at 700.835 kb on - strand, within LU632_RS03435at 701.014 kb on - strand, within LU632_RS03435at 701.149 kb on + strand, within LU632_RS03435at 701.149 kb on + strand, within LU632_RS03435at 701.149 kb on + strand, within LU632_RS03435at 701.149 kb on + strand, within LU632_RS03435at 701.151 kb on + strand, within LU632_RS03435at 701.224 kb on + strand, within LU632_RS03435at 701.244 kb on + strand, within LU632_RS03435at 701.252 kb on + strand, within LU632_RS03435at 701.253 kb on - strand, within LU632_RS03435at 701.253 kb on - strand, within LU632_RS03435at 701.253 kb on - strand, within LU632_RS03435at 701.277 kb on - strand, within LU632_RS03435at 701.429 kb on + strand, within LU632_RS03435at 701.429 kb on + strand, within LU632_RS03435at 701.430 kb on - strand, within LU632_RS03435at 701.430 kb on - strand, within LU632_RS03435at 701.430 kb on - strand, within LU632_RS03435at 701.430 kb on - strand, within LU632_RS03435at 701.433 kb on + strand, within LU632_RS03435at 701.452 kb on + strand, within LU632_RS03435at 701.452 kb on + strand, within LU632_RS03435at 701.452 kb on + strand, within LU632_RS03435at 701.452 kb on + strand, within LU632_RS03435at 701.453 kb on - strand, within LU632_RS03435at 701.453 kb on - strand, within LU632_RS03435at 701.453 kb on - strand, within LU632_RS03435at 701.453 kb on - strand, within LU632_RS03435at 701.679 kb on + strand, within LU632_RS03435at 701.679 kb on + strand, within LU632_RS03435at 701.679 kb on + strand, within LU632_RS03435at 701.679 kb on + strand, within LU632_RS03435at 701.679 kb on + strand, within LU632_RS03435at 701.679 kb on + strand, within LU632_RS03435at 701.679 kb on + strand, within LU632_RS03435at 701.679 kb on + strand, within LU632_RS03435at 701.679 kb on + strand, within LU632_RS03435at 701.680 kb on - strand, within LU632_RS03435at 701.680 kb on - strand, within LU632_RS03435at 701.680 kb on - strand, within LU632_RS03435at 701.680 kb on - strand, within LU632_RS03435at 701.680 kb on - strand, within LU632_RS03435at 701.680 kb on - strand, within LU632_RS03435at 701.680 kb on - strand, within LU632_RS03435at 701.680 kb on - strand, within LU632_RS03435at 701.821 kb on + strand, within LU632_RS03435at 701.822 kb on - strand, within LU632_RS03435at 701.822 kb on - strand, within LU632_RS03435at 701.822 kb on - strand, within LU632_RS03435at 701.905 kb on + strand, within LU632_RS03435at 701.976 kb on - strand, within LU632_RS03435at 702.005 kb on + strand, within LU632_RS03435at 702.034 kb on - strand, within LU632_RS03435at 702.115 kb on - strand, within LU632_RS03435at 702.274 kb on - strand, within LU632_RS03435at 702.286 kb on - strand, within LU632_RS03435at 702.358 kb on - strand, within LU632_RS03435at 702.358 kb on - strand, within LU632_RS03435at 702.358 kb on - strand, within LU632_RS03435at 702.361 kb on + strand, within LU632_RS03435at 702.388 kb on - strand, within LU632_RS03435at 702.392 kb on - strand, within LU632_RS03435at 702.472 kb on + strand, within LU632_RS03435at 702.547 kb on - strand, within LU632_RS03435at 702.592 kb on + strand, within LU632_RS03435at 702.592 kb on + strand, within LU632_RS03435at 702.592 kb on + strand, within LU632_RS03435at 702.593 kb on - strand, within LU632_RS03435at 702.593 kb on - strand, within LU632_RS03435at 702.593 kb on - strand, within LU632_RS03435at 702.645 kb on + strand, within LU632_RS03435at 702.670 kb on - strand, within LU632_RS03435at 702.673 kb on - strand, within LU632_RS03435at 702.725 kb on + strandat 702.794 kb on - strandat 702.794 kb on - strandat 702.825 kb on - strandat 702.825 kb on - strandat 702.825 kb on - strandat 702.949 kb on + strandat 702.949 kb on + strandat 702.950 kb on - strandat 702.962 kb on - strandat 703.083 kb on + strandat 703.343 kb on + strandat 703.347 kb on + strandat 703.347 kb on + strandat 703.347 kb on + strandat 703.348 kb on - strandat 703.348 kb on - strandat 703.348 kb on - strandat 703.349 kb on + strandat 703.349 kb on + strandat 703.350 kb on - strandat 703.351 kb on + strandat 703.351 kb on + strandat 703.406 kb on + strandat 703.414 kb on + strandat 703.491 kb on - strand, within LU632_RS03440at 703.506 kb on + strand, within LU632_RS03440at 703.653 kb on + strand, within LU632_RS03440at 703.654 kb on - strand, within LU632_RS03440at 703.819 kb on + strandat 703.820 kb on - strandat 703.822 kb on + strandat 703.823 kb on - strandat 703.823 kb on - strandat 703.975 kb on - strand, within LU632_RS03445

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
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699,484 + +2.1
699,521 - -0.5
699,546 - LU632_RS03425 0.11 +0.2
699,546 - LU632_RS03425 0.11 +1.1
699,563 - LU632_RS03425 0.19 -1.7
699,566 + LU632_RS03425 0.20 -2.4
699,566 + LU632_RS03425 0.20 -0.3
699,622 + LU632_RS03425 0.43 +1.1
699,622 + LU632_RS03425 0.43 -2.5
699,622 + LU632_RS03425 0.43 -0.9
699,622 + LU632_RS03425 0.43 -0.0
699,622 + LU632_RS03425 0.43 +1.1
699,622 + LU632_RS03425 0.43 -2.1
699,623 - LU632_RS03425 0.44 +1.9
699,623 - LU632_RS03425 0.44 +0.5
699,759 + -1.2
699,826 - -2.4
699,858 - -0.7
699,858 - -0.3
699,885 + +1.0
699,886 - +1.1
700,026 - LU632_RS03430 0.28 -0.5
700,067 + LU632_RS03430 0.45 -0.9
700,068 - LU632_RS03430 0.46 +0.2
700,068 - LU632_RS03430 0.46 -1.2
700,068 - LU632_RS03430 0.46 -1.2
700,072 + LU632_RS03430 0.47 +0.5
700,073 - LU632_RS03430 0.48 +4.3
700,073 - LU632_RS03430 0.48 +2.1
700,091 + LU632_RS03430 0.55 -0.3
700,438 - +0.4
700,587 + LU632_RS03435 0.14 -0.5
700,587 + LU632_RS03435 0.14 -0.2
700,628 - LU632_RS03435 0.16 -0.6
700,629 + LU632_RS03435 0.16 +1.9
700,630 - LU632_RS03435 0.16 +0.1
700,630 - LU632_RS03435 0.16 -2.2
700,635 - LU632_RS03435 0.16 -0.9
700,714 - LU632_RS03435 0.19 +0.5
700,725 - LU632_RS03435 0.19 +0.1
700,727 + LU632_RS03435 0.19 -2.8
700,727 + LU632_RS03435 0.19 +0.5
700,728 - LU632_RS03435 0.19 +1.7
700,835 - LU632_RS03435 0.23 +1.5
701,014 - LU632_RS03435 0.29 +2.0
701,149 + LU632_RS03435 0.34 +1.0
701,149 + LU632_RS03435 0.34 +3.1
701,149 + LU632_RS03435 0.34 -2.9
701,149 + LU632_RS03435 0.34 -1.4
701,151 + LU632_RS03435 0.34 -2.5
701,224 + LU632_RS03435 0.37 -0.4
701,244 + LU632_RS03435 0.38 -0.9
701,252 + LU632_RS03435 0.38 +0.7
701,253 - LU632_RS03435 0.38 +0.8
701,253 - LU632_RS03435 0.38 -1.5
701,253 - LU632_RS03435 0.38 +1.1
701,277 - LU632_RS03435 0.39 -1.9
701,429 + LU632_RS03435 0.44 +0.8
701,429 + LU632_RS03435 0.44 +1.1
701,430 - LU632_RS03435 0.44 -2.1
701,430 - LU632_RS03435 0.44 -0.7
701,430 - LU632_RS03435 0.44 -2.1
701,430 - LU632_RS03435 0.44 +0.1
701,433 + LU632_RS03435 0.44 +1.8
701,452 + LU632_RS03435 0.45 +0.1
701,452 + LU632_RS03435 0.45 -0.9
701,452 + LU632_RS03435 0.45 +0.0
701,452 + LU632_RS03435 0.45 -3.4
701,453 - LU632_RS03435 0.45 +0.3
701,453 - LU632_RS03435 0.45 +0.6
701,453 - LU632_RS03435 0.45 +2.6
701,453 - LU632_RS03435 0.45 +1.5
701,679 + LU632_RS03435 0.53 +1.0
701,679 + LU632_RS03435 0.53 -0.9
701,679 + LU632_RS03435 0.53 +1.7
701,679 + LU632_RS03435 0.53 -1.2
701,679 + LU632_RS03435 0.53 +1.1
701,679 + LU632_RS03435 0.53 +0.8
701,679 + LU632_RS03435 0.53 +1.2
701,679 + LU632_RS03435 0.53 +0.1
701,679 + LU632_RS03435 0.53 +0.2
701,680 - LU632_RS03435 0.53 -2.2
701,680 - LU632_RS03435 0.53 +1.1
701,680 - LU632_RS03435 0.53 +1.0
701,680 - LU632_RS03435 0.53 -1.9
701,680 - LU632_RS03435 0.53 -0.2
701,680 - LU632_RS03435 0.53 +0.6
701,680 - LU632_RS03435 0.53 -0.3
701,680 - LU632_RS03435 0.53 -2.6
701,821 + LU632_RS03435 0.58 -3.5
701,822 - LU632_RS03435 0.58 +0.1
701,822 - LU632_RS03435 0.58 -2.9
701,822 - LU632_RS03435 0.58 +1.0
701,905 + LU632_RS03435 0.61 -0.4
701,976 - LU632_RS03435 0.64 +1.1
702,005 + LU632_RS03435 0.65 -2.0
702,034 - LU632_RS03435 0.66 -1.7
702,115 - LU632_RS03435 0.69 -0.7
702,274 - LU632_RS03435 0.74 +1.4
702,286 - LU632_RS03435 0.75 -1.9
702,358 - LU632_RS03435 0.77 +0.4
702,358 - LU632_RS03435 0.77 +2.5
702,358 - LU632_RS03435 0.77 +0.7
702,361 + LU632_RS03435 0.77 -0.5
702,388 - LU632_RS03435 0.78 +0.1
702,392 - LU632_RS03435 0.78 -0.0
702,472 + LU632_RS03435 0.81 -0.4
702,547 - LU632_RS03435 0.84 -1.5
702,592 + LU632_RS03435 0.86 +1.1
702,592 + LU632_RS03435 0.86 +0.7
702,592 + LU632_RS03435 0.86 +0.5
702,593 - LU632_RS03435 0.86 -0.2
702,593 - LU632_RS03435 0.86 -1.1
702,593 - LU632_RS03435 0.86 +0.2
702,645 + LU632_RS03435 0.87 -1.7
702,670 - LU632_RS03435 0.88 +3.7
702,673 - LU632_RS03435 0.88 +0.3
702,725 + -2.2
702,794 - +0.3
702,794 - +0.4
702,825 - -0.0
702,825 - +0.6
702,825 - -1.7
702,949 + +0.4
702,949 + -0.2
702,950 - +3.9
702,962 - -1.9
703,083 + +1.6
703,343 + -0.6
703,347 + -1.4
703,347 + -0.2
703,347 + +0.3
703,348 - +1.8
703,348 - +0.2
703,348 - +1.2
703,349 + -0.3
703,349 + -0.8
703,350 - +1.7
703,351 + +0.7
703,351 + -1.8
703,406 + -3.2
703,414 + -0.9
703,491 - LU632_RS03440 0.22 -0.8
703,506 + LU632_RS03440 0.25 -1.2
703,653 + LU632_RS03440 0.59 +0.1
703,654 - LU632_RS03440 0.59 +0.1
703,819 + +0.4
703,820 - +1.1
703,822 + +0.6
703,823 - -1.7
703,823 - -1.2
703,975 - LU632_RS03445 0.26 -0.5

Or see this region's nucleotide sequence