Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03370 and LU632_RS03375 are separated by 4 nucleotides LU632_RS03375 and LU632_RS03380 overlap by 4 nucleotides LU632_RS03380 and LU632_RS03385 are separated by 213 nucleotides LU632_RS03385 and LU632_RS03390 are separated by 68 nucleotides
LU632_RS03370: LU632_RS03370 - integrase, at 692,407 to 692,592
_RS03370
LU632_RS03375: LU632_RS03375 - Fic family protein, at 692,597 to 693,211
_RS03375
LU632_RS03380: LU632_RS03380 - hypothetical protein, at 693,208 to 693,366
_RS03380
LU632_RS03385: LU632_RS03385 - HNH endonuclease, at 693,580 to 693,852
_RS03385
LU632_RS03390: LU632_RS03390 - IS3 family transposase, at 693,921 to 695,041
_RS03390
Position (kb) 693
694 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 692.614 kb on + strand at 692.615 kb on - strand at 692.615 kb on - strand at 692.615 kb on - strand at 692.665 kb on + strand, within LU632_RS03375 at 692.666 kb on - strand, within LU632_RS03375 at 692.668 kb on + strand, within LU632_RS03375 at 692.668 kb on + strand, within LU632_RS03375 at 692.742 kb on + strand, within LU632_RS03375 at 692.742 kb on + strand, within LU632_RS03375 at 692.743 kb on - strand, within LU632_RS03375 at 692.785 kb on + strand, within LU632_RS03375 at 692.785 kb on + strand, within LU632_RS03375 at 692.786 kb on - strand, within LU632_RS03375 at 692.822 kb on + strand, within LU632_RS03375 at 692.823 kb on - strand, within LU632_RS03375 at 692.823 kb on - strand, within LU632_RS03375 at 692.856 kb on + strand, within LU632_RS03375 at 692.860 kb on + strand, within LU632_RS03375 at 692.958 kb on + strand, within LU632_RS03375 at 693.167 kb on + strand at 693.168 kb on - strand at 693.168 kb on - strand at 693.168 kb on - strand at 693.196 kb on + strand at 693.197 kb on - strand at 693.197 kb on - strand at 693.198 kb on + strand at 693.199 kb on - strand at 693.199 kb on - strand at 693.399 kb on - strand at 693.474 kb on + strand at 693.527 kb on - strand at 693.561 kb on - strand at 693.596 kb on - strand at 693.679 kb on + strand, within LU632_RS03385 at 693.680 kb on - strand, within LU632_RS03385 at 693.680 kb on - strand, within LU632_RS03385 at 693.680 kb on - strand, within LU632_RS03385 at 693.680 kb on - strand, within LU632_RS03385 at 693.712 kb on - strand, within LU632_RS03385 at 693.712 kb on - strand, within LU632_RS03385 at 693.712 kb on - strand, within LU632_RS03385 at 693.726 kb on + strand, within LU632_RS03385 at 693.740 kb on + strand, within LU632_RS03385 at 693.740 kb on + strand, within LU632_RS03385 at 693.740 kb on + strand, within LU632_RS03385 at 693.741 kb on - strand, within LU632_RS03385 at 693.764 kb on + strand, within LU632_RS03385 at 693.765 kb on - strand, within LU632_RS03385 at 693.765 kb on - strand, within LU632_RS03385 at 693.765 kb on - strand, within LU632_RS03385 at 693.765 kb on - strand, within LU632_RS03385 at 693.765 kb on - strand, within LU632_RS03385 at 693.765 kb on - strand, within LU632_RS03385 at 693.811 kb on + strand, within LU632_RS03385 at 693.811 kb on + strand, within LU632_RS03385 at 693.873 kb on - strand at 693.873 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 692,614 + -0.1 692,615 - +0.3 692,615 - +0.7 692,615 - +1.1 692,665 + LU632_RS03375 0.11 +0.4 692,666 - LU632_RS03375 0.11 +0.1 692,668 + LU632_RS03375 0.12 -0.1 692,668 + LU632_RS03375 0.12 +0.8 692,742 + LU632_RS03375 0.24 +1.4 692,742 + LU632_RS03375 0.24 -0.2 692,743 - LU632_RS03375 0.24 +0.2 692,785 + LU632_RS03375 0.31 +1.8 692,785 + LU632_RS03375 0.31 -2.2 692,786 - LU632_RS03375 0.31 +0.8 692,822 + LU632_RS03375 0.37 -0.7 692,823 - LU632_RS03375 0.37 -0.5 692,823 - LU632_RS03375 0.37 +0.4 692,856 + LU632_RS03375 0.42 -1.0 692,860 + LU632_RS03375 0.43 -2.2 692,958 + LU632_RS03375 0.59 +1.1 693,167 + +2.4 693,168 - +0.6 693,168 - +5.4 693,168 - -0.1 693,196 + -1.5 693,197 - +2.3 693,197 - +0.4 693,198 + -0.2 693,199 - -2.5 693,199 - +1.0 693,399 - -1.2 693,474 + +0.1 693,527 - +0.2 693,561 - -2.0 693,596 - +2.3 693,679 + LU632_RS03385 0.36 +0.4 693,680 - LU632_RS03385 0.37 -0.8 693,680 - LU632_RS03385 0.37 -3.3 693,680 - LU632_RS03385 0.37 -0.3 693,680 - LU632_RS03385 0.37 -0.9 693,712 - LU632_RS03385 0.48 -1.5 693,712 - LU632_RS03385 0.48 +1.3 693,712 - LU632_RS03385 0.48 -1.2 693,726 + LU632_RS03385 0.53 +0.8 693,740 + LU632_RS03385 0.59 -1.9 693,740 + LU632_RS03385 0.59 -0.2 693,740 + LU632_RS03385 0.59 +4.2 693,741 - LU632_RS03385 0.59 +0.1 693,764 + LU632_RS03385 0.67 -1.2 693,765 - LU632_RS03385 0.68 +0.0 693,765 - LU632_RS03385 0.68 +3.6 693,765 - LU632_RS03385 0.68 -0.1 693,765 - LU632_RS03385 0.68 -1.9 693,765 - LU632_RS03385 0.68 -1.5 693,765 - LU632_RS03385 0.68 -2.5 693,811 + LU632_RS03385 0.85 +0.3 693,811 + LU632_RS03385 0.85 -0.2 693,873 - -0.5 693,873 - +1.4
Or see this region's nucleotide sequence