Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sctT and sctS are separated by 1 nucleotides sctS and sctR are separated by 7 nucleotides sctR and sctQ overlap by 4 nucleotides sctQ and LU632_RS03155 overlap by 4 nucleotides LU632_RS03155 and LU632_RS03160 overlap by 1 nucleotides LU632_RS03160 and sctN overlap by 17 nucleotides
LU632_RS03135: sctT - type III secretion system export apparatus subunit SctT, at 642,907 to 643,704
sctT
LU632_RS03140: sctS - type III secretion system export apparatus subunit SctS, at 643,706 to 643,966
sctS
LU632_RS03145: sctR - type III secretion system export apparatus subunit SctR, at 643,974 to 644,627
sctR
LU632_RS03150: sctQ - type III secretion system cytoplasmic ring protein SctQ, at 644,624 to 645,673
sctQ
LU632_RS03155: LU632_RS03155 - type III secretion system HrpP C-terminal domain-containing protein, at 645,670 to 646,143
_RS03155
LU632_RS03160: LU632_RS03160 - hypothetical protein, at 646,143 to 646,586
_RS03160
LU632_RS03165: sctN - type III secretion system ATPase SctN, at 646,570 to 647,937
sctN
Position (kb) 644
645
646 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 643.677 kb on - strand at 643.707 kb on + strand at 643.707 kb on + strand at 643.707 kb on + strand at 643.707 kb on + strand at 643.707 kb on + strand at 643.708 kb on - strand at 643.799 kb on - strand, within sctS at 643.802 kb on + strand, within sctS at 643.802 kb on + strand, within sctS at 643.862 kb on + strand, within sctS at 643.863 kb on - strand, within sctS at 643.982 kb on - strand at 643.987 kb on + strand at 643.992 kb on + strand at 643.993 kb on - strand at 644.140 kb on + strand, within sctR at 644.140 kb on + strand, within sctR at 644.141 kb on - strand, within sctR at 644.141 kb on - strand, within sctR at 644.141 kb on - strand, within sctR at 644.160 kb on - strand, within sctR at 644.160 kb on - strand, within sctR at 644.213 kb on + strand, within sctR at 644.310 kb on - strand, within sctR at 644.343 kb on - strand, within sctR at 644.371 kb on - strand, within sctR at 644.371 kb on - strand, within sctR at 644.411 kb on + strand, within sctR at 644.411 kb on + strand, within sctR at 644.411 kb on + strand, within sctR at 644.670 kb on - strand at 644.859 kb on - strand, within sctQ at 644.886 kb on + strand, within sctQ at 645.015 kb on - strand, within sctQ at 645.015 kb on - strand, within sctQ at 645.026 kb on + strand, within sctQ at 645.075 kb on + strand, within sctQ at 645.076 kb on - strand, within sctQ at 645.168 kb on + strand, within sctQ at 645.168 kb on + strand, within sctQ at 645.169 kb on - strand, within sctQ at 645.252 kb on + strand, within sctQ at 645.252 kb on + strand, within sctQ at 645.253 kb on - strand, within sctQ at 645.253 kb on - strand, within sctQ at 645.305 kb on + strand, within sctQ at 645.306 kb on - strand, within sctQ at 645.306 kb on - strand, within sctQ at 645.306 kb on - strand, within sctQ at 645.306 kb on - strand, within sctQ at 645.306 kb on - strand, within sctQ at 645.376 kb on - strand, within sctQ at 645.454 kb on + strand, within sctQ at 645.454 kb on + strand, within sctQ at 645.454 kb on + strand, within sctQ at 645.454 kb on + strand, within sctQ at 645.455 kb on - strand, within sctQ at 645.489 kb on + strand, within sctQ at 645.559 kb on + strand, within sctQ at 645.560 kb on - strand, within sctQ at 645.560 kb on - strand, within sctQ at 645.591 kb on + strand at 645.591 kb on + strand at 645.592 kb on - strand at 645.674 kb on - strand at 645.861 kb on + strand, within LU632_RS03155 at 645.862 kb on - strand, within LU632_RS03155 at 645.978 kb on + strand, within LU632_RS03155 at 645.999 kb on - strand, within LU632_RS03155 at 646.065 kb on + strand, within LU632_RS03155 at 646.066 kb on - strand, within LU632_RS03155 at 646.066 kb on - strand, within LU632_RS03155 at 646.137 kb on + strand at 646.137 kb on + strand at 646.137 kb on + strand at 646.138 kb on - strand at 646.138 kb on - strand at 646.138 kb on - strand at 646.138 kb on - strand at 646.171 kb on + strand at 646.171 kb on + strand at 646.171 kb on + strand at 646.172 kb on - strand at 646.172 kb on - strand at 646.267 kb on + strand, within LU632_RS03160 at 646.268 kb on - strand, within LU632_RS03160 at 646.286 kb on + strand, within LU632_RS03160 at 646.287 kb on - strand, within LU632_RS03160 at 646.359 kb on + strand, within LU632_RS03160 at 646.360 kb on - strand, within LU632_RS03160 at 646.668 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 643,677 - +0.2 643,707 + +2.5 643,707 + -2.4 643,707 + -1.6 643,707 + -0.4 643,707 + -0.8 643,708 - -1.1 643,799 - sctS LU632_RS03140 0.36 -2.5 643,802 + sctS LU632_RS03140 0.37 -2.0 643,802 + sctS LU632_RS03140 0.37 -1.4 643,862 + sctS LU632_RS03140 0.60 -2.1 643,863 - sctS LU632_RS03140 0.60 -1.0 643,982 - -2.3 643,987 + -0.8 643,992 + +1.2 643,993 - -2.4 644,140 + sctR LU632_RS03145 0.25 -2.1 644,140 + sctR LU632_RS03145 0.25 +1.2 644,141 - sctR LU632_RS03145 0.26 -3.7 644,141 - sctR LU632_RS03145 0.26 +2.3 644,141 - sctR LU632_RS03145 0.26 -0.9 644,160 - sctR LU632_RS03145 0.28 -3.6 644,160 - sctR LU632_RS03145 0.28 -2.7 644,213 + sctR LU632_RS03145 0.37 -1.5 644,310 - sctR LU632_RS03145 0.51 -3.1 644,343 - sctR LU632_RS03145 0.56 +0.6 644,371 - sctR LU632_RS03145 0.61 +0.7 644,371 - sctR LU632_RS03145 0.61 -2.7 644,411 + sctR LU632_RS03145 0.67 -0.9 644,411 + sctR LU632_RS03145 0.67 -3.5 644,411 + sctR LU632_RS03145 0.67 -1.1 644,670 - -2.2 644,859 - sctQ LU632_RS03150 0.22 -1.6 644,886 + sctQ LU632_RS03150 0.25 +1.2 645,015 - sctQ LU632_RS03150 0.37 -2.6 645,015 - sctQ LU632_RS03150 0.37 -0.0 645,026 + sctQ LU632_RS03150 0.38 -0.8 645,075 + sctQ LU632_RS03150 0.43 -3.0 645,076 - sctQ LU632_RS03150 0.43 +3.8 645,168 + sctQ LU632_RS03150 0.52 -0.4 645,168 + sctQ LU632_RS03150 0.52 +0.2 645,169 - sctQ LU632_RS03150 0.52 -0.2 645,252 + sctQ LU632_RS03150 0.60 -2.8 645,252 + sctQ LU632_RS03150 0.60 -1.9 645,253 - sctQ LU632_RS03150 0.60 -1.2 645,253 - sctQ LU632_RS03150 0.60 +0.2 645,305 + sctQ LU632_RS03150 0.65 -1.4 645,306 - sctQ LU632_RS03150 0.65 -3.2 645,306 - sctQ LU632_RS03150 0.65 +1.2 645,306 - sctQ LU632_RS03150 0.65 -0.4 645,306 - sctQ LU632_RS03150 0.65 -1.6 645,306 - sctQ LU632_RS03150 0.65 -2.0 645,376 - sctQ LU632_RS03150 0.72 -2.1 645,454 + sctQ LU632_RS03150 0.79 -0.4 645,454 + sctQ LU632_RS03150 0.79 -2.5 645,454 + sctQ LU632_RS03150 0.79 -0.4 645,454 + sctQ LU632_RS03150 0.79 -4.2 645,455 - sctQ LU632_RS03150 0.79 -1.6 645,489 + sctQ LU632_RS03150 0.82 -3.3 645,559 + sctQ LU632_RS03150 0.89 -1.6 645,560 - sctQ LU632_RS03150 0.89 -0.9 645,560 - sctQ LU632_RS03150 0.89 -0.4 645,591 + -2.1 645,591 + -2.1 645,592 - -2.8 645,674 - -2.4 645,861 + LU632_RS03155 0.40 -2.4 645,862 - LU632_RS03155 0.41 -2.8 645,978 + LU632_RS03155 0.65 -3.2 645,999 - LU632_RS03155 0.69 +0.2 646,065 + LU632_RS03155 0.83 -0.4 646,066 - LU632_RS03155 0.84 -0.1 646,066 - LU632_RS03155 0.84 -2.9 646,137 + -1.5 646,137 + -0.4 646,137 + +0.2 646,138 - -1.1 646,138 - -1.0 646,138 - -0.4 646,138 - -0.5 646,171 + -1.6 646,171 + -1.5 646,171 + -3.9 646,172 - -2.0 646,172 - -1.5 646,267 + LU632_RS03160 0.28 -1.6 646,268 - LU632_RS03160 0.28 -0.4 646,286 + LU632_RS03160 0.32 -0.8 646,287 - LU632_RS03160 0.32 -2.4 646,359 + LU632_RS03160 0.49 -2.6 646,360 - LU632_RS03160 0.49 -2.9 646,668 + -2.0
Or see this region's nucleotide sequence