Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sctU and sctT overlap by 1 nucleotides sctT and sctS are separated by 1 nucleotides sctS and sctR are separated by 7 nucleotides sctR and sctQ overlap by 4 nucleotides
LU632_RS03130: sctU - type III secretion system export apparatus subunit SctU, at 641,825 to 642,907
sctU
LU632_RS03135: sctT - type III secretion system export apparatus subunit SctT, at 642,907 to 643,704
sctT
LU632_RS03140: sctS - type III secretion system export apparatus subunit SctS, at 643,706 to 643,966
sctS
LU632_RS03145: sctR - type III secretion system export apparatus subunit SctR, at 643,974 to 644,627
sctR
LU632_RS03150: sctQ - type III secretion system cytoplasmic ring protein SctQ, at 644,624 to 645,673
sctQ
Position (kb) 643
644 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 642.782 kb on + strand, within sctU at 642.821 kb on - strand at 642.998 kb on + strand, within sctT at 642.998 kb on + strand, within sctT at 642.998 kb on + strand, within sctT at 642.999 kb on - strand, within sctT at 642.999 kb on - strand, within sctT at 643.049 kb on - strand, within sctT at 643.081 kb on + strand, within sctT at 643.140 kb on + strand, within sctT at 643.141 kb on - strand, within sctT at 643.141 kb on - strand, within sctT at 643.143 kb on + strand, within sctT at 643.179 kb on - strand, within sctT at 643.187 kb on - strand, within sctT at 643.239 kb on - strand, within sctT at 643.251 kb on + strand, within sctT at 643.313 kb on - strand, within sctT at 643.432 kb on - strand, within sctT at 643.596 kb on + strand, within sctT at 643.596 kb on + strand, within sctT at 643.677 kb on - strand at 643.707 kb on + strand at 643.707 kb on + strand at 643.707 kb on + strand at 643.707 kb on + strand at 643.707 kb on + strand at 643.708 kb on - strand at 643.799 kb on - strand, within sctS at 643.802 kb on + strand, within sctS at 643.802 kb on + strand, within sctS at 643.862 kb on + strand, within sctS at 643.863 kb on - strand, within sctS at 643.982 kb on - strand at 643.987 kb on + strand at 643.992 kb on + strand at 643.993 kb on - strand at 644.140 kb on + strand, within sctR at 644.140 kb on + strand, within sctR at 644.141 kb on - strand, within sctR at 644.141 kb on - strand, within sctR at 644.141 kb on - strand, within sctR at 644.160 kb on - strand, within sctR at 644.160 kb on - strand, within sctR at 644.213 kb on + strand, within sctR at 644.310 kb on - strand, within sctR at 644.343 kb on - strand, within sctR at 644.371 kb on - strand, within sctR at 644.371 kb on - strand, within sctR at 644.411 kb on + strand, within sctR at 644.411 kb on + strand, within sctR at 644.411 kb on + strand, within sctR at 644.670 kb on - strand at 644.859 kb on - strand, within sctQ at 644.886 kb on + strand, within sctQ
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 642,782 + sctU LU632_RS03130 0.88 -3.6 642,821 - -1.6 642,998 + sctT LU632_RS03135 0.11 -1.6 642,998 + sctT LU632_RS03135 0.11 -2.0 642,998 + sctT LU632_RS03135 0.11 +1.2 642,999 - sctT LU632_RS03135 0.12 -3.3 642,999 - sctT LU632_RS03135 0.12 +1.4 643,049 - sctT LU632_RS03135 0.18 -1.5 643,081 + sctT LU632_RS03135 0.22 -0.8 643,140 + sctT LU632_RS03135 0.29 -1.9 643,141 - sctT LU632_RS03135 0.29 -0.9 643,141 - sctT LU632_RS03135 0.29 -1.6 643,143 + sctT LU632_RS03135 0.30 -0.1 643,179 - sctT LU632_RS03135 0.34 -0.3 643,187 - sctT LU632_RS03135 0.35 -1.5 643,239 - sctT LU632_RS03135 0.42 -1.8 643,251 + sctT LU632_RS03135 0.43 -2.1 643,313 - sctT LU632_RS03135 0.51 -2.6 643,432 - sctT LU632_RS03135 0.66 -0.8 643,596 + sctT LU632_RS03135 0.86 -2.1 643,596 + sctT LU632_RS03135 0.86 +0.6 643,677 - +0.2 643,707 + +2.5 643,707 + -2.4 643,707 + -1.6 643,707 + -0.4 643,707 + -0.8 643,708 - -1.1 643,799 - sctS LU632_RS03140 0.36 -2.5 643,802 + sctS LU632_RS03140 0.37 -2.0 643,802 + sctS LU632_RS03140 0.37 -1.4 643,862 + sctS LU632_RS03140 0.60 -2.1 643,863 - sctS LU632_RS03140 0.60 -1.0 643,982 - -2.3 643,987 + -0.8 643,992 + +1.2 643,993 - -2.4 644,140 + sctR LU632_RS03145 0.25 -2.1 644,140 + sctR LU632_RS03145 0.25 +1.2 644,141 - sctR LU632_RS03145 0.26 -3.7 644,141 - sctR LU632_RS03145 0.26 +2.3 644,141 - sctR LU632_RS03145 0.26 -0.9 644,160 - sctR LU632_RS03145 0.28 -3.6 644,160 - sctR LU632_RS03145 0.28 -2.7 644,213 + sctR LU632_RS03145 0.37 -1.5 644,310 - sctR LU632_RS03145 0.51 -3.1 644,343 - sctR LU632_RS03145 0.56 +0.6 644,371 - sctR LU632_RS03145 0.61 +0.7 644,371 - sctR LU632_RS03145 0.61 -2.7 644,411 + sctR LU632_RS03145 0.67 -0.9 644,411 + sctR LU632_RS03145 0.67 -3.5 644,411 + sctR LU632_RS03145 0.67 -1.1 644,670 - -2.2 644,859 - sctQ LU632_RS03150 0.22 -1.6 644,886 + sctQ LU632_RS03150 0.25 +1.2
Or see this region's nucleotide sequence