Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zapD and coaE are separated by 4 nucleotides coaE and LU632_RS03020 are separated by 245 nucleotides LU632_RS03020 and hofC are separated by 50 nucleotides
LU632_RS03010: zapD - cell division protein ZapD, at 615,185 to 615,928
zapD
LU632_RS03015: coaE - dephospho-CoA kinase, at 615,933 to 616,544
coaE
LU632_RS03020: LU632_RS03020 - GMP reductase, at 616,790 to 617,830
_RS03020
LU632_RS03025: hofC - protein transport protein HofC, at 617,881 to 619,080
hofC
Position (kb) 616
617
618 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 615.845 kb on + strand, within zapD at 616.552 kb on + strand at 616.555 kb on - strand at 616.560 kb on - strand at 616.629 kb on + strand at 616.629 kb on + strand at 616.630 kb on - strand at 616.640 kb on + strand at 616.679 kb on - strand at 616.720 kb on - strand at 616.720 kb on - strand at 616.752 kb on - strand at 616.755 kb on - strand at 616.755 kb on - strand at 616.760 kb on - strand at 616.809 kb on + strand at 616.830 kb on + strand at 616.830 kb on + strand at 616.830 kb on + strand at 616.830 kb on + strand at 616.830 kb on + strand at 616.830 kb on + strand at 616.831 kb on - strand at 616.936 kb on + strand, within LU632_RS03020 at 616.948 kb on + strand, within LU632_RS03020 at 616.969 kb on + strand, within LU632_RS03020 at 616.970 kb on - strand, within LU632_RS03020 at 616.970 kb on - strand, within LU632_RS03020 at 616.970 kb on - strand, within LU632_RS03020 at 616.970 kb on - strand, within LU632_RS03020 at 617.025 kb on - strand, within LU632_RS03020 at 617.025 kb on - strand, within LU632_RS03020 at 617.025 kb on - strand, within LU632_RS03020 at 617.073 kb on + strand, within LU632_RS03020 at 617.095 kb on + strand, within LU632_RS03020 at 617.123 kb on - strand, within LU632_RS03020 at 617.128 kb on - strand, within LU632_RS03020 at 617.178 kb on + strand, within LU632_RS03020 at 617.179 kb on - strand, within LU632_RS03020 at 617.260 kb on + strand, within LU632_RS03020 at 617.311 kb on + strand, within LU632_RS03020 at 617.312 kb on - strand, within LU632_RS03020 at 617.370 kb on + strand, within LU632_RS03020 at 617.397 kb on + strand, within LU632_RS03020 at 617.471 kb on - strand, within LU632_RS03020 at 617.472 kb on + strand, within LU632_RS03020 at 617.472 kb on + strand, within LU632_RS03020 at 617.472 kb on + strand, within LU632_RS03020 at 617.472 kb on + strand, within LU632_RS03020 at 617.473 kb on - strand, within LU632_RS03020 at 617.473 kb on - strand, within LU632_RS03020 at 617.473 kb on - strand, within LU632_RS03020 at 617.518 kb on + strand, within LU632_RS03020 at 617.519 kb on - strand, within LU632_RS03020 at 617.578 kb on + strand, within LU632_RS03020 at 617.578 kb on + strand, within LU632_RS03020 at 617.642 kb on + strand, within LU632_RS03020 at 617.692 kb on - strand, within LU632_RS03020 at 617.696 kb on - strand, within LU632_RS03020 at 617.710 kb on + strand, within LU632_RS03020 at 617.737 kb on + strand at 617.741 kb on + strand at 617.742 kb on - strand at 617.742 kb on - strand at 617.868 kb on + strand at 617.869 kb on - strand at 617.869 kb on - strand at 617.869 kb on - strand at 617.918 kb on + strand at 617.956 kb on + strand at 617.995 kb on - strand at 618.048 kb on + strand, within hofC at 618.048 kb on + strand, within hofC at 618.048 kb on + strand, within hofC at 618.049 kb on - strand, within hofC at 618.049 kb on - strand, within hofC at 618.049 kb on - strand, within hofC at 618.049 kb on - strand, within hofC at 618.049 kb on - strand, within hofC at 618.092 kb on + strand, within hofC at 618.132 kb on + strand, within hofC at 618.132 kb on + strand, within hofC at 618.133 kb on - strand, within hofC at 618.135 kb on - strand, within hofC at 618.135 kb on - strand, within hofC at 618.135 kb on - strand, within hofC at 618.136 kb on + strand, within hofC at 618.136 kb on + strand, within hofC at 618.137 kb on - strand, within hofC at 618.156 kb on + strand, within hofC at 618.157 kb on - strand, within hofC at 618.223 kb on + strand, within hofC at 618.228 kb on + strand, within hofC at 618.274 kb on - strand, within hofC at 618.274 kb on - strand, within hofC at 618.274 kb on - strand, within hofC at 618.277 kb on + strand, within hofC at 618.278 kb on - strand, within hofC at 618.278 kb on - strand, within hofC at 618.348 kb on + strand, within hofC at 618.395 kb on + strand, within hofC at 618.406 kb on + strand, within hofC at 618.406 kb on + strand, within hofC at 618.407 kb on - strand, within hofC at 618.460 kb on + strand, within hofC at 618.460 kb on + strand, within hofC at 618.503 kb on + strand, within hofC at 618.503 kb on + strand, within hofC at 618.503 kb on + strand, within hofC at 618.505 kb on + strand, within hofC at 618.506 kb on - strand, within hofC at 618.527 kb on - strand, within hofC at 618.613 kb on + strand, within hofC at 618.666 kb on + strand, within hofC at 618.769 kb on - strand, within hofC
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 615,845 + zapD LU632_RS03010 0.89 +2.0 616,552 + +0.2 616,555 - -0.2 616,560 - -0.8 616,629 + -2.1 616,629 + +1.4 616,630 - +0.2 616,640 + +0.8 616,679 - +0.9 616,720 - +0.6 616,720 - +0.2 616,752 - -1.4 616,755 - +0.1 616,755 - -0.2 616,760 - +0.6 616,809 + +0.4 616,830 + +0.3 616,830 + -0.1 616,830 + +1.5 616,830 + +4.0 616,830 + -0.4 616,830 + -0.2 616,831 - +2.2 616,936 + LU632_RS03020 0.14 +0.8 616,948 + LU632_RS03020 0.15 +1.6 616,969 + LU632_RS03020 0.17 +0.8 616,970 - LU632_RS03020 0.17 +0.1 616,970 - LU632_RS03020 0.17 +0.5 616,970 - LU632_RS03020 0.17 +1.3 616,970 - LU632_RS03020 0.17 +0.2 617,025 - LU632_RS03020 0.23 -2.9 617,025 - LU632_RS03020 0.23 -0.4 617,025 - LU632_RS03020 0.23 -0.4 617,073 + LU632_RS03020 0.27 -0.3 617,095 + LU632_RS03020 0.29 -2.1 617,123 - LU632_RS03020 0.32 -2.2 617,128 - LU632_RS03020 0.32 +1.4 617,178 + LU632_RS03020 0.37 +2.2 617,179 - LU632_RS03020 0.37 +0.0 617,260 + LU632_RS03020 0.45 -0.5 617,311 + LU632_RS03020 0.50 +0.4 617,312 - LU632_RS03020 0.50 +0.8 617,370 + LU632_RS03020 0.56 -1.9 617,397 + LU632_RS03020 0.58 +0.2 617,471 - LU632_RS03020 0.65 -2.4 617,472 + LU632_RS03020 0.66 +0.4 617,472 + LU632_RS03020 0.66 +0.8 617,472 + LU632_RS03020 0.66 +0.5 617,472 + LU632_RS03020 0.66 +0.2 617,473 - LU632_RS03020 0.66 +0.9 617,473 - LU632_RS03020 0.66 +2.2 617,473 - LU632_RS03020 0.66 -1.1 617,518 + LU632_RS03020 0.70 -0.9 617,519 - LU632_RS03020 0.70 +1.6 617,578 + LU632_RS03020 0.76 -0.6 617,578 + LU632_RS03020 0.76 +1.1 617,642 + LU632_RS03020 0.82 -0.3 617,692 - LU632_RS03020 0.87 +0.5 617,696 - LU632_RS03020 0.87 +1.2 617,710 + LU632_RS03020 0.88 +1.0 617,737 + -0.6 617,741 + +0.0 617,742 - -0.4 617,742 - +0.8 617,868 + +1.2 617,869 - +2.0 617,869 - +1.8 617,869 - -1.7 617,918 + -0.8 617,956 + +0.2 617,995 - +0.5 618,048 + hofC LU632_RS03025 0.14 -3.2 618,048 + hofC LU632_RS03025 0.14 -2.2 618,048 + hofC LU632_RS03025 0.14 +0.5 618,049 - hofC LU632_RS03025 0.14 +2.4 618,049 - hofC LU632_RS03025 0.14 -3.0 618,049 - hofC LU632_RS03025 0.14 +1.2 618,049 - hofC LU632_RS03025 0.14 +0.5 618,049 - hofC LU632_RS03025 0.14 +1.2 618,092 + hofC LU632_RS03025 0.18 -2.0 618,132 + hofC LU632_RS03025 0.21 +3.8 618,132 + hofC LU632_RS03025 0.21 -1.1 618,133 - hofC LU632_RS03025 0.21 +1.2 618,135 - hofC LU632_RS03025 0.21 +0.4 618,135 - hofC LU632_RS03025 0.21 +2.2 618,135 - hofC LU632_RS03025 0.21 -1.4 618,136 + hofC LU632_RS03025 0.21 -0.3 618,136 + hofC LU632_RS03025 0.21 -1.4 618,137 - hofC LU632_RS03025 0.21 -1.4 618,156 + hofC LU632_RS03025 0.23 -0.5 618,157 - hofC LU632_RS03025 0.23 -0.7 618,223 + hofC LU632_RS03025 0.28 +0.9 618,228 + hofC LU632_RS03025 0.29 +0.5 618,274 - hofC LU632_RS03025 0.33 -1.2 618,274 - hofC LU632_RS03025 0.33 +1.2 618,274 - hofC LU632_RS03025 0.33 +0.5 618,277 + hofC LU632_RS03025 0.33 +2.6 618,278 - hofC LU632_RS03025 0.33 -0.3 618,278 - hofC LU632_RS03025 0.33 -0.2 618,348 + hofC LU632_RS03025 0.39 -0.7 618,395 + hofC LU632_RS03025 0.43 +0.9 618,406 + hofC LU632_RS03025 0.44 -0.4 618,406 + hofC LU632_RS03025 0.44 +1.5 618,407 - hofC LU632_RS03025 0.44 +0.0 618,460 + hofC LU632_RS03025 0.48 -0.4 618,460 + hofC LU632_RS03025 0.48 -2.2 618,503 + hofC LU632_RS03025 0.52 -1.7 618,503 + hofC LU632_RS03025 0.52 -0.1 618,503 + hofC LU632_RS03025 0.52 -2.4 618,505 + hofC LU632_RS03025 0.52 -1.4 618,506 - hofC LU632_RS03025 0.52 -1.6 618,527 - hofC LU632_RS03025 0.54 +1.8 618,613 + hofC LU632_RS03025 0.61 -0.4 618,666 + hofC LU632_RS03025 0.65 -1.6 618,769 - hofC LU632_RS03025 0.74 -0.8
Or see this region's nucleotide sequence