Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02510 and deoC are separated by 274 nucleotides deoC and LU632_RS02520 are separated by 15 nucleotides LU632_RS02520 and deoB are separated by 79 nucleotides
LU632_RS02510: LU632_RS02510 - TatD family hydrolase, at 498,339 to 499,115
_RS02510
LU632_RS02515: deoC - deoxyribose-phosphate aldolase, at 499,390 to 500,169
deoC
LU632_RS02520: LU632_RS02520 - thymidine phosphorylase, at 500,185 to 501,027
_RS02520
LU632_RS02525: deoB - phosphopentomutase, at 501,107 to 502,330
deoB
Position (kb) 499
500
501 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 498.516 kb on + strand, within LU632_RS02510 at 498.555 kb on + strand, within LU632_RS02510 at 498.588 kb on + strand, within LU632_RS02510 at 498.588 kb on + strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.590 kb on + strand, within LU632_RS02510 at 498.591 kb on - strand, within LU632_RS02510 at 498.721 kb on + strand, within LU632_RS02510 at 498.722 kb on - strand, within LU632_RS02510 at 498.722 kb on - strand, within LU632_RS02510 at 498.889 kb on - strand, within LU632_RS02510 at 499.092 kb on - strand at 499.109 kb on + strand at 499.110 kb on - strand at 499.209 kb on + strand at 499.209 kb on + strand at 499.210 kb on - strand at 499.214 kb on + strand at 499.214 kb on + strand at 499.215 kb on - strand at 499.215 kb on - strand at 499.215 kb on - strand at 499.306 kb on + strand at 499.307 kb on - strand at 499.307 kb on - strand at 499.358 kb on + strand at 499.359 kb on - strand at 499.530 kb on + strand, within deoC at 499.530 kb on + strand, within deoC at 499.531 kb on - strand, within deoC at 499.531 kb on - strand, within deoC at 499.534 kb on + strand, within deoC at 499.884 kb on + strand, within deoC at 500.053 kb on - strand, within deoC at 500.331 kb on + strand, within LU632_RS02520 at 500.331 kb on + strand, within LU632_RS02520 at 500.331 kb on + strand, within LU632_RS02520 at 500.332 kb on - strand, within LU632_RS02520 at 500.332 kb on - strand, within LU632_RS02520 at 500.403 kb on + strand, within LU632_RS02520 at 500.425 kb on + strand, within LU632_RS02520 at 500.426 kb on - strand, within LU632_RS02520 at 500.426 kb on - strand, within LU632_RS02520 at 500.429 kb on - strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.511 kb on + strand, within LU632_RS02520 at 500.857 kb on + strand, within LU632_RS02520 at 500.857 kb on + strand, within LU632_RS02520 at 500.858 kb on - strand, within LU632_RS02520 at 500.959 kb on + strand at 500.959 kb on + strand at 501.051 kb on + strand at 501.117 kb on + strand at 501.117 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 498,516 + LU632_RS02510 0.23 -0.0 498,555 + LU632_RS02510 0.28 +0.4 498,588 + LU632_RS02510 0.32 +0.5 498,588 + LU632_RS02510 0.32 -0.4 498,589 - LU632_RS02510 0.32 -0.1 498,589 - LU632_RS02510 0.32 -1.5 498,589 - LU632_RS02510 0.32 -0.2 498,589 - LU632_RS02510 0.32 +1.2 498,589 - LU632_RS02510 0.32 -0.5 498,590 + LU632_RS02510 0.32 -1.1 498,591 - LU632_RS02510 0.32 -1.5 498,721 + LU632_RS02510 0.49 +1.3 498,722 - LU632_RS02510 0.49 +1.6 498,722 - LU632_RS02510 0.49 +0.6 498,889 - LU632_RS02510 0.71 -0.1 499,092 - +1.4 499,109 + +0.2 499,110 - -0.4 499,209 + +0.3 499,209 + -2.8 499,210 - +1.2 499,214 + -2.7 499,214 + -1.1 499,215 - +0.8 499,215 - -1.1 499,215 - -1.3 499,306 + -0.3 499,307 - +0.0 499,307 - -0.1 499,358 + +0.8 499,359 - +0.2 499,530 + deoC LU632_RS02515 0.18 +0.1 499,530 + deoC LU632_RS02515 0.18 -0.4 499,531 - deoC LU632_RS02515 0.18 +0.5 499,531 - deoC LU632_RS02515 0.18 -0.0 499,534 + deoC LU632_RS02515 0.18 -0.6 499,884 + deoC LU632_RS02515 0.63 -0.6 500,053 - deoC LU632_RS02515 0.85 -0.1 500,331 + LU632_RS02520 0.17 +0.6 500,331 + LU632_RS02520 0.17 -4.6 500,331 + LU632_RS02520 0.17 +0.2 500,332 - LU632_RS02520 0.17 +1.8 500,332 - LU632_RS02520 0.17 +1.9 500,403 + LU632_RS02520 0.26 -0.8 500,425 + LU632_RS02520 0.28 -0.3 500,426 - LU632_RS02520 0.29 -1.1 500,426 - LU632_RS02520 0.29 -3.1 500,429 - LU632_RS02520 0.29 -2.5 500,494 + LU632_RS02520 0.37 +0.9 500,494 + LU632_RS02520 0.37 -0.9 500,494 + LU632_RS02520 0.37 +1.2 500,494 + LU632_RS02520 0.37 -2.7 500,495 - LU632_RS02520 0.37 -0.8 500,495 - LU632_RS02520 0.37 +2.2 500,495 - LU632_RS02520 0.37 +1.1 500,511 + LU632_RS02520 0.39 -0.6 500,857 + LU632_RS02520 0.80 -3.4 500,857 + LU632_RS02520 0.80 -0.1 500,858 - LU632_RS02520 0.80 -0.8 500,959 + -1.7 500,959 + -0.1 501,051 + +0.6 501,117 + -1.4 501,117 + -3.0
Or see this region's nucleotide sequence