Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02435 and LU632_RS02440 overlap by 8 nucleotides LU632_RS02440 and LU632_RS02445 overlap by 8 nucleotides LU632_RS02445 and LU632_RS02450 are separated by 56 nucleotides
LU632_RS02435: LU632_RS02435 - ABC transporter substrate-binding protein, at 485,766 to 486,785
_RS02435
LU632_RS02440: LU632_RS02440 - ABC transporter ATP-binding protein, at 486,778 to 487,590
_RS02440
LU632_RS02445: LU632_RS02445 - ABC transporter permease, at 487,583 to 488,419
_RS02445
LU632_RS02450: LU632_RS02450 - hypothetical protein, at 488,476 to 488,580
_RS02450
Position (kb) 486
487
488 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 485.803 kb on + strand at 485.888 kb on - strand, within LU632_RS02435 at 485.888 kb on - strand, within LU632_RS02435 at 485.890 kb on - strand, within LU632_RS02435 at 485.890 kb on - strand, within LU632_RS02435 at 485.930 kb on + strand, within LU632_RS02435 at 486.038 kb on + strand, within LU632_RS02435 at 486.039 kb on - strand, within LU632_RS02435 at 486.039 kb on - strand, within LU632_RS02435 at 486.039 kb on - strand, within LU632_RS02435 at 486.045 kb on - strand, within LU632_RS02435 at 486.049 kb on + strand, within LU632_RS02435 at 486.066 kb on + strand, within LU632_RS02435 at 486.068 kb on + strand, within LU632_RS02435 at 486.068 kb on + strand, within LU632_RS02435 at 486.068 kb on + strand, within LU632_RS02435 at 486.068 kb on + strand, within LU632_RS02435 at 486.167 kb on + strand, within LU632_RS02435 at 486.218 kb on + strand, within LU632_RS02435 at 486.219 kb on - strand, within LU632_RS02435 at 486.219 kb on - strand, within LU632_RS02435 at 486.223 kb on + strand, within LU632_RS02435 at 486.224 kb on - strand, within LU632_RS02435 at 486.314 kb on + strand, within LU632_RS02435 at 486.314 kb on + strand, within LU632_RS02435 at 486.315 kb on - strand, within LU632_RS02435 at 486.315 kb on - strand, within LU632_RS02435 at 486.315 kb on - strand, within LU632_RS02435 at 486.366 kb on - strand, within LU632_RS02435 at 486.374 kb on + strand, within LU632_RS02435 at 486.377 kb on + strand, within LU632_RS02435 at 486.377 kb on + strand, within LU632_RS02435 at 486.377 kb on + strand, within LU632_RS02435 at 486.499 kb on + strand, within LU632_RS02435 at 486.523 kb on + strand, within LU632_RS02435 at 486.618 kb on - strand, within LU632_RS02435 at 486.618 kb on - strand, within LU632_RS02435 at 486.625 kb on + strand, within LU632_RS02435 at 486.625 kb on + strand, within LU632_RS02435 at 486.625 kb on + strand, within LU632_RS02435 at 486.625 kb on + strand, within LU632_RS02435 at 486.625 kb on + strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.635 kb on + strand, within LU632_RS02435 at 486.635 kb on + strand, within LU632_RS02435 at 486.635 kb on + strand, within LU632_RS02435 at 486.635 kb on + strand, within LU632_RS02435 at 486.636 kb on - strand, within LU632_RS02435 at 486.656 kb on + strand, within LU632_RS02435 at 486.791 kb on + strand at 486.792 kb on - strand at 486.814 kb on + strand at 486.814 kb on + strand at 486.815 kb on - strand at 486.854 kb on + strand at 486.854 kb on + strand at 486.925 kb on - strand, within LU632_RS02440 at 487.012 kb on - strand, within LU632_RS02440 at 487.012 kb on - strand, within LU632_RS02440 at 487.012 kb on - strand, within LU632_RS02440 at 487.027 kb on + strand, within LU632_RS02440 at 487.030 kb on - strand, within LU632_RS02440 at 487.030 kb on - strand, within LU632_RS02440 at 487.047 kb on - strand, within LU632_RS02440 at 487.160 kb on + strand, within LU632_RS02440 at 487.177 kb on + strand, within LU632_RS02440 at 487.178 kb on - strand, within LU632_RS02440 at 487.325 kb on + strand, within LU632_RS02440 at 487.352 kb on + strand, within LU632_RS02440 at 487.353 kb on - strand, within LU632_RS02440 at 487.353 kb on - strand, within LU632_RS02440 at 487.353 kb on - strand, within LU632_RS02440 at 487.439 kb on + strand, within LU632_RS02440 at 487.439 kb on + strand, within LU632_RS02440 at 487.479 kb on - strand, within LU632_RS02440 at 487.514 kb on + strand at 487.515 kb on - strand at 487.515 kb on - strand at 487.518 kb on + strand at 487.518 kb on + strand at 487.518 kb on + strand at 487.518 kb on + strand at 487.518 kb on + strand at 487.519 kb on - strand at 487.519 kb on - strand at 487.536 kb on - strand at 487.551 kb on - strand at 487.569 kb on + strand at 487.569 kb on + strand at 487.569 kb on + strand at 487.624 kb on - strand at 487.946 kb on + strand, within LU632_RS02445 at 487.947 kb on - strand, within LU632_RS02445 at 487.999 kb on + strand, within LU632_RS02445 at 488.000 kb on - strand, within LU632_RS02445 at 488.000 kb on - strand, within LU632_RS02445 at 488.077 kb on - strand, within LU632_RS02445 at 488.077 kb on - strand, within LU632_RS02445 at 488.099 kb on - strand, within LU632_RS02445 at 488.166 kb on - strand, within LU632_RS02445 at 488.166 kb on - strand, within LU632_RS02445 at 488.206 kb on + strand, within LU632_RS02445 at 488.206 kb on + strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.249 kb on + strand, within LU632_RS02445 at 488.250 kb on - strand, within LU632_RS02445 at 488.277 kb on - strand, within LU632_RS02445 at 488.277 kb on - strand, within LU632_RS02445 at 488.280 kb on + strand, within LU632_RS02445 at 488.280 kb on + strand, within LU632_RS02445 at 488.315 kb on - strand, within LU632_RS02445 at 488.315 kb on - strand, within LU632_RS02445 at 488.337 kb on + strand at 488.337 kb on + strand at 488.338 kb on - strand at 488.359 kb on - strand at 488.361 kb on + strand at 488.378 kb on - strand at 488.398 kb on + strand at 488.398 kb on + strand at 488.398 kb on + strand at 488.477 kb on + strand at 488.528 kb on + strand, within LU632_RS02450 at 488.550 kb on + strand, within LU632_RS02450
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 485,803 + +0.7 485,888 - LU632_RS02435 0.12 -3.9 485,888 - LU632_RS02435 0.12 -1.5 485,890 - LU632_RS02435 0.12 +0.8 485,890 - LU632_RS02435 0.12 +1.0 485,930 + LU632_RS02435 0.16 +1.1 486,038 + LU632_RS02435 0.27 +1.1 486,039 - LU632_RS02435 0.27 -0.6 486,039 - LU632_RS02435 0.27 +0.3 486,039 - LU632_RS02435 0.27 +1.5 486,045 - LU632_RS02435 0.27 -2.0 486,049 + LU632_RS02435 0.28 +0.1 486,066 + LU632_RS02435 0.29 -0.4 486,068 + LU632_RS02435 0.30 -2.3 486,068 + LU632_RS02435 0.30 +0.6 486,068 + LU632_RS02435 0.30 -2.1 486,068 + LU632_RS02435 0.30 +0.3 486,167 + LU632_RS02435 0.39 +1.0 486,218 + LU632_RS02435 0.44 +0.4 486,219 - LU632_RS02435 0.44 +0.8 486,219 - LU632_RS02435 0.44 -2.1 486,223 + LU632_RS02435 0.45 -1.6 486,224 - LU632_RS02435 0.45 +0.3 486,314 + LU632_RS02435 0.54 -0.4 486,314 + LU632_RS02435 0.54 -2.5 486,315 - LU632_RS02435 0.54 +0.2 486,315 - LU632_RS02435 0.54 +1.2 486,315 - LU632_RS02435 0.54 +1.9 486,366 - LU632_RS02435 0.59 -1.5 486,374 + LU632_RS02435 0.60 +2.2 486,377 + LU632_RS02435 0.60 +3.7 486,377 + LU632_RS02435 0.60 -0.9 486,377 + LU632_RS02435 0.60 +1.2 486,499 + LU632_RS02435 0.72 -0.4 486,523 + LU632_RS02435 0.74 +1.2 486,618 - LU632_RS02435 0.84 +0.2 486,618 - LU632_RS02435 0.84 +0.7 486,625 + LU632_RS02435 0.84 +3.5 486,625 + LU632_RS02435 0.84 -0.8 486,625 + LU632_RS02435 0.84 -1.4 486,625 + LU632_RS02435 0.84 -1.4 486,625 + LU632_RS02435 0.84 +0.1 486,626 - LU632_RS02435 0.84 +0.5 486,626 - LU632_RS02435 0.84 +0.2 486,626 - LU632_RS02435 0.84 +1.5 486,626 - LU632_RS02435 0.84 +0.9 486,626 - LU632_RS02435 0.84 +0.4 486,626 - LU632_RS02435 0.84 -3.5 486,626 - LU632_RS02435 0.84 +0.8 486,626 - LU632_RS02435 0.84 -1.1 486,635 + LU632_RS02435 0.85 +0.2 486,635 + LU632_RS02435 0.85 -1.2 486,635 + LU632_RS02435 0.85 +0.4 486,635 + LU632_RS02435 0.85 -0.8 486,636 - LU632_RS02435 0.85 -1.5 486,656 + LU632_RS02435 0.87 +0.3 486,791 + +0.3 486,792 - +0.8 486,814 + -0.2 486,814 + +0.6 486,815 - +0.3 486,854 + +3.2 486,854 + +0.8 486,925 - LU632_RS02440 0.18 -2.0 487,012 - LU632_RS02440 0.29 +1.5 487,012 - LU632_RS02440 0.29 -1.8 487,012 - LU632_RS02440 0.29 +1.5 487,027 + LU632_RS02440 0.31 -1.6 487,030 - LU632_RS02440 0.31 -1.9 487,030 - LU632_RS02440 0.31 +0.7 487,047 - LU632_RS02440 0.33 +1.5 487,160 + LU632_RS02440 0.47 -2.0 487,177 + LU632_RS02440 0.49 +1.6 487,178 - LU632_RS02440 0.49 -1.0 487,325 + LU632_RS02440 0.67 -0.2 487,352 + LU632_RS02440 0.71 +1.2 487,353 - LU632_RS02440 0.71 -1.7 487,353 - LU632_RS02440 0.71 +1.4 487,353 - LU632_RS02440 0.71 -2.9 487,439 + LU632_RS02440 0.81 +1.2 487,439 + LU632_RS02440 0.81 +1.3 487,479 - LU632_RS02440 0.86 -0.8 487,514 + -0.2 487,515 - +1.2 487,515 - +0.7 487,518 + +0.8 487,518 + +1.4 487,518 + -2.7 487,518 + +0.5 487,518 + +0.8 487,519 - +2.3 487,519 - +0.4 487,536 - -0.5 487,551 - +0.2 487,569 + -0.4 487,569 + -1.8 487,569 + -0.8 487,624 - -1.6 487,946 + LU632_RS02445 0.43 +1.5 487,947 - LU632_RS02445 0.43 +1.2 487,999 + LU632_RS02445 0.50 +1.2 488,000 - LU632_RS02445 0.50 -1.6 488,000 - LU632_RS02445 0.50 +0.2 488,077 - LU632_RS02445 0.59 -0.3 488,077 - LU632_RS02445 0.59 -2.0 488,099 - LU632_RS02445 0.62 -0.8 488,166 - LU632_RS02445 0.70 +0.4 488,166 - LU632_RS02445 0.70 +0.0 488,206 + LU632_RS02445 0.74 +1.9 488,206 + LU632_RS02445 0.74 -1.8 488,207 - LU632_RS02445 0.75 -0.1 488,207 - LU632_RS02445 0.75 +5.2 488,207 - LU632_RS02445 0.75 +2.1 488,249 + LU632_RS02445 0.80 +1.4 488,250 - LU632_RS02445 0.80 -0.6 488,277 - LU632_RS02445 0.83 +1.4 488,277 - LU632_RS02445 0.83 +0.2 488,280 + LU632_RS02445 0.83 +0.7 488,280 + LU632_RS02445 0.83 +2.2 488,315 - LU632_RS02445 0.87 -0.1 488,315 - LU632_RS02445 0.87 -0.4 488,337 + -2.3 488,337 + +0.2 488,338 - +0.4 488,359 - +2.3 488,361 + +0.9 488,378 - -2.0 488,398 + +0.7 488,398 + +2.2 488,398 + -0.9 488,477 + +1.2 488,528 + LU632_RS02450 0.50 +0.3 488,550 + LU632_RS02450 0.70 +2.2
Or see this region's nucleotide sequence