Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00875 and LU632_RS00880 are separated by 12 nucleotides LU632_RS00880 and LU632_RS00885 are separated by 147 nucleotides LU632_RS00885 and LU632_RS00890 are separated by 6 nucleotides LU632_RS00890 and tuf are separated by 113 nucleotides tuf and secE are separated by 352 nucleotides secE and nusG are separated by 1 nucleotides
LU632_RS00875: LU632_RS00875 - tRNA-Thr, at 191,221 to 191,296
_RS00875
LU632_RS00880: LU632_RS00880 - tRNA-Tyr, at 191,309 to 191,393
_RS00880
LU632_RS00885: LU632_RS00885 - tRNA-Gly, at 191,541 to 191,615
_RS00885
LU632_RS00890: LU632_RS00890 - tRNA-Thr, at 191,622 to 191,697
_RS00890
LU632_RS00895: tuf - elongation factor Tu, at 191,811 to 192,995
tuf
LU632_RS00900: secE - preprotein translocase subunit SecE, at 193,348 to 193,731
secE
LU632_RS00905: nusG - transcription termination/antitermination protein NusG, at 193,733 to 194,278
nusG
Position (kb) 191
192
193 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 190.831 kb on + strand at 190.832 kb on - strand at 190.836 kb on + strand at 190.892 kb on - strand at 190.895 kb on - strand at 190.931 kb on + strand at 190.932 kb on - strand at 190.972 kb on - strand at 191.068 kb on + strand at 191.072 kb on - strand at 191.103 kb on + strand at 191.481 kb on + strand at 191.481 kb on + strand at 191.702 kb on + strand at 191.702 kb on + strand at 191.702 kb on + strand at 191.702 kb on + strand at 191.703 kb on - strand at 191.703 kb on - strand at 191.729 kb on + strand at 191.730 kb on - strand at 191.775 kb on + strand at 192.072 kb on + strand, within tuf at 192.198 kb on + strand, within tuf at 192.198 kb on + strand, within tuf at 192.402 kb on - strand, within tuf at 192.405 kb on + strand, within tuf at 192.405 kb on + strand, within tuf at 192.405 kb on + strand, within tuf at 192.405 kb on + strand, within tuf at 192.405 kb on + strand, within tuf at 192.405 kb on + strand, within tuf at 192.405 kb on + strand, within tuf at 192.405 kb on + strand, within tuf at 192.405 kb on + strand, within tuf at 192.406 kb on - strand, within tuf at 192.406 kb on - strand, within tuf at 192.406 kb on - strand, within tuf at 192.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 190,831 + +1.6 190,832 - -1.8 190,836 + +2.7 190,892 - +1.2 190,895 - -0.3 190,931 + -1.7 190,932 - -2.1 190,972 - -0.5 191,068 + -1.4 191,072 - +0.9 191,103 + -1.6 191,481 + +1.2 191,481 + +1.2 191,702 + -1.8 191,702 + -2.7 191,702 + -2.2 191,702 + +1.1 191,703 - -1.6 191,703 - -1.4 191,729 + -1.4 191,730 - -1.4 191,775 + -1.7 192,072 + tuf LU632_RS00895 0.22 +0.2 192,198 + tuf LU632_RS00895 0.33 -0.2 192,198 + tuf LU632_RS00895 0.33 -1.4 192,402 - tuf LU632_RS00895 0.50 -1.6 192,405 + tuf LU632_RS00895 0.50 -2.0 192,405 + tuf LU632_RS00895 0.50 -2.0 192,405 + tuf LU632_RS00895 0.50 -1.1 192,405 + tuf LU632_RS00895 0.50 -2.4 192,405 + tuf LU632_RS00895 0.50 -1.1 192,405 + tuf LU632_RS00895 0.50 -1.9 192,405 + tuf LU632_RS00895 0.50 +0.2 192,405 + tuf LU632_RS00895 0.50 -1.4 192,405 + tuf LU632_RS00895 0.50 +0.6 192,406 - tuf LU632_RS00895 0.50 -1.5 192,406 - tuf LU632_RS00895 0.50 -1.9 192,406 - tuf LU632_RS00895 0.50 -2.1 192,956 + -3.8
Or see this region's nucleotide sequence