Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS11850

Experiment: Yeast Extract 2.5 mg/mL (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS11845 and HMPREF1181_RS11850 are separated by 2 nucleotidesHMPREF1181_RS11850 and HMPREF1181_RS11855 are separated by 21 nucleotides HMPREF1181_RS11845: HMPREF1181_RS11845 - ABC transporter substrate-binding protein, at 370,993 to 372,129 _RS11845 HMPREF1181_RS11850: HMPREF1181_RS11850 - hypothetical protein, at 372,132 to 373,265 _RS11850 HMPREF1181_RS11855: HMPREF1181_RS11855 - TonB-dependent receptor, at 373,287 to 375,299 _RS11855 Position (kb) 372 373 374Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 371.151 kb on + strand, within HMPREF1181_RS11845at 371.170 kb on - strand, within HMPREF1181_RS11845at 371.171 kb on + strand, within HMPREF1181_RS11845at 371.171 kb on + strand, within HMPREF1181_RS11845at 371.176 kb on + strand, within HMPREF1181_RS11845at 371.177 kb on - strand, within HMPREF1181_RS11845at 371.180 kb on + strand, within HMPREF1181_RS11845at 371.201 kb on + strand, within HMPREF1181_RS11845at 371.202 kb on - strand, within HMPREF1181_RS11845at 371.208 kb on + strand, within HMPREF1181_RS11845at 371.230 kb on - strand, within HMPREF1181_RS11845at 371.239 kb on + strand, within HMPREF1181_RS11845at 371.340 kb on + strand, within HMPREF1181_RS11845at 371.358 kb on + strand, within HMPREF1181_RS11845at 371.458 kb on - strand, within HMPREF1181_RS11845at 371.466 kb on + strand, within HMPREF1181_RS11845at 371.488 kb on + strand, within HMPREF1181_RS11845at 371.592 kb on + strand, within HMPREF1181_RS11845at 371.784 kb on + strand, within HMPREF1181_RS11845at 371.784 kb on + strand, within HMPREF1181_RS11845at 371.785 kb on - strand, within HMPREF1181_RS11845at 371.785 kb on - strand, within HMPREF1181_RS11845at 371.806 kb on - strand, within HMPREF1181_RS11845at 371.920 kb on - strand, within HMPREF1181_RS11845at 371.959 kb on + strand, within HMPREF1181_RS11845at 371.959 kb on + strand, within HMPREF1181_RS11845at 371.959 kb on + strand, within HMPREF1181_RS11845at 371.971 kb on - strand, within HMPREF1181_RS11845at 372.028 kb on - strandat 372.039 kb on + strandat 372.113 kb on - strandat 372.118 kb on - strandat 372.144 kb on + strandat 372.218 kb on + strandat 372.218 kb on + strandat 372.249 kb on - strand, within HMPREF1181_RS11850at 372.261 kb on - strand, within HMPREF1181_RS11850at 372.270 kb on - strand, within HMPREF1181_RS11850at 372.296 kb on + strand, within HMPREF1181_RS11850at 372.296 kb on + strand, within HMPREF1181_RS11850at 372.296 kb on + strand, within HMPREF1181_RS11850at 372.296 kb on + strand, within HMPREF1181_RS11850at 372.296 kb on + strand, within HMPREF1181_RS11850at 372.326 kb on + strand, within HMPREF1181_RS11850at 372.372 kb on - strand, within HMPREF1181_RS11850at 372.373 kb on + strand, within HMPREF1181_RS11850at 372.373 kb on + strand, within HMPREF1181_RS11850at 372.396 kb on - strand, within HMPREF1181_RS11850at 372.444 kb on + strand, within HMPREF1181_RS11850at 372.464 kb on + strand, within HMPREF1181_RS11850at 372.464 kb on + strand, within HMPREF1181_RS11850at 372.465 kb on - strand, within HMPREF1181_RS11850at 372.466 kb on + strand, within HMPREF1181_RS11850at 372.466 kb on + strand, within HMPREF1181_RS11850at 372.467 kb on - strand, within HMPREF1181_RS11850at 372.485 kb on + strand, within HMPREF1181_RS11850at 372.514 kb on - strand, within HMPREF1181_RS11850at 372.541 kb on - strand, within HMPREF1181_RS11850at 372.575 kb on + strand, within HMPREF1181_RS11850at 372.575 kb on + strand, within HMPREF1181_RS11850at 372.576 kb on - strand, within HMPREF1181_RS11850at 372.715 kb on + strand, within HMPREF1181_RS11850at 372.715 kb on + strand, within HMPREF1181_RS11850at 372.715 kb on + strand, within HMPREF1181_RS11850at 372.716 kb on - strand, within HMPREF1181_RS11850at 372.726 kb on - strand, within HMPREF1181_RS11850at 372.728 kb on + strand, within HMPREF1181_RS11850at 372.789 kb on + strand, within HMPREF1181_RS11850at 372.794 kb on + strand, within HMPREF1181_RS11850at 372.803 kb on + strand, within HMPREF1181_RS11850at 372.838 kb on + strand, within HMPREF1181_RS11850at 372.838 kb on + strand, within HMPREF1181_RS11850at 372.842 kb on + strand, within HMPREF1181_RS11850at 372.843 kb on - strand, within HMPREF1181_RS11850at 372.962 kb on - strand, within HMPREF1181_RS11850at 372.963 kb on + strand, within HMPREF1181_RS11850at 372.974 kb on - strand, within HMPREF1181_RS11850at 372.974 kb on - strand, within HMPREF1181_RS11850at 372.977 kb on + strand, within HMPREF1181_RS11850at 372.977 kb on + strand, within HMPREF1181_RS11850at 372.977 kb on + strand, within HMPREF1181_RS11850at 372.977 kb on + strand, within HMPREF1181_RS11850at 373.081 kb on + strand, within HMPREF1181_RS11850at 373.104 kb on - strand, within HMPREF1181_RS11850at 373.115 kb on + strand, within HMPREF1181_RS11850at 373.197 kb on - strandat 373.230 kb on - strandat 373.249 kb on - strandat 373.340 kb on - strandat 373.355 kb on - strandat 373.355 kb on - strandat 373.401 kb on - strandat 373.489 kb on + strand, within HMPREF1181_RS11855at 373.491 kb on - strand, within HMPREF1181_RS11855at 373.492 kb on + strand, within HMPREF1181_RS11855at 373.492 kb on + strand, within HMPREF1181_RS11855at 373.558 kb on - strand, within HMPREF1181_RS11855at 373.575 kb on - strand, within HMPREF1181_RS11855at 373.582 kb on + strand, within HMPREF1181_RS11855at 373.598 kb on + strand, within HMPREF1181_RS11855at 373.601 kb on - strand, within HMPREF1181_RS11855at 373.607 kb on + strand, within HMPREF1181_RS11855at 373.608 kb on - strand, within HMPREF1181_RS11855at 373.630 kb on - strand, within HMPREF1181_RS11855at 373.632 kb on - strand, within HMPREF1181_RS11855at 373.648 kb on + strand, within HMPREF1181_RS11855at 373.707 kb on - strand, within HMPREF1181_RS11855at 373.801 kb on + strand, within HMPREF1181_RS11855at 373.801 kb on + strand, within HMPREF1181_RS11855at 373.802 kb on - strand, within HMPREF1181_RS11855at 373.804 kb on + strand, within HMPREF1181_RS11855at 373.825 kb on - strand, within HMPREF1181_RS11855at 373.864 kb on - strand, within HMPREF1181_RS11855at 373.871 kb on + strand, within HMPREF1181_RS11855at 373.871 kb on + strand, within HMPREF1181_RS11855at 373.872 kb on - strand, within HMPREF1181_RS11855at 373.874 kb on + strand, within HMPREF1181_RS11855at 373.876 kb on + strand, within HMPREF1181_RS11855at 373.924 kb on + strand, within HMPREF1181_RS11855at 373.927 kb on + strand, within HMPREF1181_RS11855at 373.958 kb on + strand, within HMPREF1181_RS11855at 374.018 kb on + strand, within HMPREF1181_RS11855at 374.157 kb on - strand, within HMPREF1181_RS11855at 374.163 kb on + strand, within HMPREF1181_RS11855at 374.164 kb on - strand, within HMPREF1181_RS11855at 374.257 kb on - strand, within HMPREF1181_RS11855

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Per-strain Table

Position Strand Gene LocusTag Fraction Yeast Extract 2.5 mg/mL (C) complex media
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371,151 + HMPREF1181_RS11845 0.14 +1.1
371,170 - HMPREF1181_RS11845 0.16 -0.8
371,171 + HMPREF1181_RS11845 0.16 +0.2
371,171 + HMPREF1181_RS11845 0.16 +0.2
371,176 + HMPREF1181_RS11845 0.16 -0.5
371,177 - HMPREF1181_RS11845 0.16 +0.5
371,180 + HMPREF1181_RS11845 0.16 +1.3
371,201 + HMPREF1181_RS11845 0.18 +1.4
371,202 - HMPREF1181_RS11845 0.18 +0.7
371,208 + HMPREF1181_RS11845 0.19 -1.0
371,230 - HMPREF1181_RS11845 0.21 -0.7
371,239 + HMPREF1181_RS11845 0.22 -0.3
371,340 + HMPREF1181_RS11845 0.31 +0.6
371,358 + HMPREF1181_RS11845 0.32 -0.1
371,458 - HMPREF1181_RS11845 0.41 -0.5
371,466 + HMPREF1181_RS11845 0.42 +0.8
371,488 + HMPREF1181_RS11845 0.44 -1.0
371,592 + HMPREF1181_RS11845 0.53 +0.8
371,784 + HMPREF1181_RS11845 0.70 +1.6
371,784 + HMPREF1181_RS11845 0.70 +0.4
371,785 - HMPREF1181_RS11845 0.70 +1.2
371,785 - HMPREF1181_RS11845 0.70 -2.6
371,806 - HMPREF1181_RS11845 0.72 +0.2
371,920 - HMPREF1181_RS11845 0.82 -2.4
371,959 + HMPREF1181_RS11845 0.85 -1.1
371,959 + HMPREF1181_RS11845 0.85 +0.1
371,959 + HMPREF1181_RS11845 0.85 -1.3
371,971 - HMPREF1181_RS11845 0.86 -1.1
372,028 - +0.6
372,039 + +2.2
372,113 - +1.1
372,118 - +0.4
372,144 + +1.5
372,218 + +1.2
372,218 + -1.1
372,249 - HMPREF1181_RS11850 0.10 -0.5
372,261 - HMPREF1181_RS11850 0.11 +0.5
372,270 - HMPREF1181_RS11850 0.12 -1.1
372,296 + HMPREF1181_RS11850 0.14 +0.1
372,296 + HMPREF1181_RS11850 0.14 +0.4
372,296 + HMPREF1181_RS11850 0.14 +0.1
372,296 + HMPREF1181_RS11850 0.14 +2.1
372,296 + HMPREF1181_RS11850 0.14 +1.4
372,326 + HMPREF1181_RS11850 0.17 -0.1
372,372 - HMPREF1181_RS11850 0.21 +0.8
372,373 + HMPREF1181_RS11850 0.21 -2.2
372,373 + HMPREF1181_RS11850 0.21 -2.2
372,396 - HMPREF1181_RS11850 0.23 -1.3
372,444 + HMPREF1181_RS11850 0.28 -0.1
372,464 + HMPREF1181_RS11850 0.29 -1.5
372,464 + HMPREF1181_RS11850 0.29 +0.8
372,465 - HMPREF1181_RS11850 0.29 -0.0
372,466 + HMPREF1181_RS11850 0.29 +0.1
372,466 + HMPREF1181_RS11850 0.29 -2.7
372,467 - HMPREF1181_RS11850 0.30 -0.8
372,485 + HMPREF1181_RS11850 0.31 +0.6
372,514 - HMPREF1181_RS11850 0.34 +1.0
372,541 - HMPREF1181_RS11850 0.36 +0.9
372,575 + HMPREF1181_RS11850 0.39 +0.5
372,575 + HMPREF1181_RS11850 0.39 -0.3
372,576 - HMPREF1181_RS11850 0.39 +1.3
372,715 + HMPREF1181_RS11850 0.51 -0.2
372,715 + HMPREF1181_RS11850 0.51 +1.1
372,715 + HMPREF1181_RS11850 0.51 -0.2
372,716 - HMPREF1181_RS11850 0.51 -1.1
372,726 - HMPREF1181_RS11850 0.52 -1.2
372,728 + HMPREF1181_RS11850 0.53 -0.7
372,789 + HMPREF1181_RS11850 0.58 -1.3
372,794 + HMPREF1181_RS11850 0.58 +0.8
372,803 + HMPREF1181_RS11850 0.59 -0.1
372,838 + HMPREF1181_RS11850 0.62 -0.4
372,838 + HMPREF1181_RS11850 0.62 -0.0
372,842 + HMPREF1181_RS11850 0.63 -2.7
372,843 - HMPREF1181_RS11850 0.63 +0.2
372,962 - HMPREF1181_RS11850 0.73 +1.9
372,963 + HMPREF1181_RS11850 0.73 -0.6
372,974 - HMPREF1181_RS11850 0.74 +0.7
372,974 - HMPREF1181_RS11850 0.74 +0.6
372,977 + HMPREF1181_RS11850 0.75 +1.6
372,977 + HMPREF1181_RS11850 0.75 +0.7
372,977 + HMPREF1181_RS11850 0.75 -0.0
372,977 + HMPREF1181_RS11850 0.75 -0.4
373,081 + HMPREF1181_RS11850 0.84 +0.9
373,104 - HMPREF1181_RS11850 0.86 -0.2
373,115 + HMPREF1181_RS11850 0.87 +0.3
373,197 - -0.6
373,230 - +0.3
373,249 - -1.1
373,340 - -1.2
373,355 - -2.7
373,355 - -0.2
373,401 - -3.2
373,489 + HMPREF1181_RS11855 0.10 +0.2
373,491 - HMPREF1181_RS11855 0.10 +1.1
373,492 + HMPREF1181_RS11855 0.10 -2.9
373,492 + HMPREF1181_RS11855 0.10 -1.6
373,558 - HMPREF1181_RS11855 0.13 -0.2
373,575 - HMPREF1181_RS11855 0.14 -1.3
373,582 + HMPREF1181_RS11855 0.15 +1.4
373,598 + HMPREF1181_RS11855 0.15 +1.1
373,601 - HMPREF1181_RS11855 0.16 -0.6
373,607 + HMPREF1181_RS11855 0.16 +1.3
373,608 - HMPREF1181_RS11855 0.16 +0.4
373,630 - HMPREF1181_RS11855 0.17 -1.7
373,632 - HMPREF1181_RS11855 0.17 -3.1
373,648 + HMPREF1181_RS11855 0.18 +0.1
373,707 - HMPREF1181_RS11855 0.21 -1.2
373,801 + HMPREF1181_RS11855 0.26 -0.3
373,801 + HMPREF1181_RS11855 0.26 +0.3
373,802 - HMPREF1181_RS11855 0.26 +0.1
373,804 + HMPREF1181_RS11855 0.26 -0.8
373,825 - HMPREF1181_RS11855 0.27 -0.4
373,864 - HMPREF1181_RS11855 0.29 -0.7
373,871 + HMPREF1181_RS11855 0.29 +0.2
373,871 + HMPREF1181_RS11855 0.29 -0.3
373,872 - HMPREF1181_RS11855 0.29 -1.1
373,874 + HMPREF1181_RS11855 0.29 +2.1
373,876 + HMPREF1181_RS11855 0.29 -0.2
373,924 + HMPREF1181_RS11855 0.32 +0.4
373,927 + HMPREF1181_RS11855 0.32 +2.0
373,958 + HMPREF1181_RS11855 0.33 +1.4
374,018 + HMPREF1181_RS11855 0.36 +0.8
374,157 - HMPREF1181_RS11855 0.43 +0.5
374,163 + HMPREF1181_RS11855 0.44 +1.0
374,164 - HMPREF1181_RS11855 0.44 +0.7
374,257 - HMPREF1181_RS11855 0.48 -0.7

Or see this region's nucleotide sequence