Experiment: Yeast Extract 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS10545 and HMPREF1181_RS10550 are separated by 24 nucleotides HMPREF1181_RS10550 and HMPREF1181_RS10555 are separated by 408 nucleotides
HMPREF1181_RS10545: HMPREF1181_RS10545 - phosphotransferase, at 83,284 to 84,714
_RS10545
HMPREF1181_RS10550: HMPREF1181_RS10550 - nucleotidyltransferase family protein, at 84,739 to 85,473
_RS10550
HMPREF1181_RS10555: HMPREF1181_RS10555 - TonB-dependent receptor, at 85,882 to 87,954
_RS10555
Position (kb) 84
85
86 Strain fitness (log2 ratio) -2
-1
0
1
2 at 83.753 kb on - strand, within HMPREF1181_RS10545 at 84.025 kb on + strand, within HMPREF1181_RS10545 at 84.067 kb on + strand, within HMPREF1181_RS10545 at 84.068 kb on - strand, within HMPREF1181_RS10545 at 84.068 kb on - strand, within HMPREF1181_RS10545 at 84.236 kb on - strand, within HMPREF1181_RS10545 at 84.311 kb on + strand, within HMPREF1181_RS10545 at 84.416 kb on - strand, within HMPREF1181_RS10545 at 84.506 kb on + strand, within HMPREF1181_RS10545 at 84.507 kb on - strand, within HMPREF1181_RS10545 at 84.538 kb on + strand, within HMPREF1181_RS10545 at 84.606 kb on - strand at 84.606 kb on - strand at 84.606 kb on - strand at 84.607 kb on + strand at 84.608 kb on - strand at 84.653 kb on + strand at 84.686 kb on + strand at 84.686 kb on + strand at 84.715 kb on + strand at 84.716 kb on - strand at 84.739 kb on - strand at 84.752 kb on + strand at 84.981 kb on + strand, within HMPREF1181_RS10550 at 85.314 kb on + strand, within HMPREF1181_RS10550 at 85.365 kb on - strand, within HMPREF1181_RS10550 at 85.365 kb on - strand, within HMPREF1181_RS10550 at 85.462 kb on + strand at 85.462 kb on + strand at 85.462 kb on + strand at 85.462 kb on + strand at 85.463 kb on - strand at 85.525 kb on + strand at 85.526 kb on - strand at 85.526 kb on - strand at 85.530 kb on - strand at 85.621 kb on - strand at 85.621 kb on - strand at 85.633 kb on - strand at 85.633 kb on - strand at 85.695 kb on + strand at 85.699 kb on - strand at 85.699 kb on - strand at 85.721 kb on - strand at 85.721 kb on - strand at 85.724 kb on + strand at 85.725 kb on - strand at 85.780 kb on + strand at 85.792 kb on - strand at 85.801 kb on - strand at 86.194 kb on + strand, within HMPREF1181_RS10555 at 86.210 kb on + strand, within HMPREF1181_RS10555 at 86.279 kb on + strand, within HMPREF1181_RS10555 at 86.279 kb on + strand, within HMPREF1181_RS10555 at 86.280 kb on - strand, within HMPREF1181_RS10555 at 86.280 kb on - strand, within HMPREF1181_RS10555 at 86.321 kb on - strand, within HMPREF1181_RS10555
Per-strain Table
Position Strand Gene LocusTag Fraction Yeast Extract 2.5 mg/mL (C) complex media remove 83,753 - HMPREF1181_RS10545 0.33 +0.7 84,025 + HMPREF1181_RS10545 0.52 -0.9 84,067 + HMPREF1181_RS10545 0.55 -0.9 84,068 - HMPREF1181_RS10545 0.55 -1.2 84,068 - HMPREF1181_RS10545 0.55 +1.4 84,236 - HMPREF1181_RS10545 0.67 -0.2 84,311 + HMPREF1181_RS10545 0.72 -0.7 84,416 - HMPREF1181_RS10545 0.79 -1.0 84,506 + HMPREF1181_RS10545 0.85 -1.2 84,507 - HMPREF1181_RS10545 0.85 +1.0 84,538 + HMPREF1181_RS10545 0.88 +1.1 84,606 - -1.1 84,606 - -0.5 84,606 - +0.1 84,607 + +1.1 84,608 - -0.2 84,653 + -0.2 84,686 + -1.3 84,686 + +0.3 84,715 + -2.3 84,716 - +0.8 84,739 - -1.1 84,752 + -0.9 84,981 + HMPREF1181_RS10550 0.33 +0.0 85,314 + HMPREF1181_RS10550 0.78 -0.7 85,365 - HMPREF1181_RS10550 0.85 +1.2 85,365 - HMPREF1181_RS10550 0.85 -1.5 85,462 + -0.6 85,462 + +0.5 85,462 + +0.7 85,462 + -0.1 85,463 - +0.7 85,525 + -0.4 85,526 - +0.4 85,526 - -2.1 85,530 - -0.3 85,621 - -0.2 85,621 - -1.8 85,633 - +0.1 85,633 - +0.2 85,695 + +0.1 85,699 - +0.4 85,699 - +1.6 85,721 - +1.4 85,721 - -0.3 85,724 + -0.5 85,725 - +1.5 85,780 + +0.8 85,792 - -0.0 85,801 - -0.4 86,194 + HMPREF1181_RS10555 0.15 +0.4 86,210 + HMPREF1181_RS10555 0.16 +0.3 86,279 + HMPREF1181_RS10555 0.19 +0.6 86,279 + HMPREF1181_RS10555 0.19 -0.2 86,280 - HMPREF1181_RS10555 0.19 +0.5 86,280 - HMPREF1181_RS10555 0.19 +2.0 86,321 - HMPREF1181_RS10555 0.21 +1.2
Or see this region's nucleotide sequence