Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS04065

Experiment: Yeast Extract 2.5 mg/mL (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS04060 and HMPREF1181_RS04065 are separated by 53 nucleotidesHMPREF1181_RS04065 and HMPREF1181_RS04070 are separated by 161 nucleotides HMPREF1181_RS04060: HMPREF1181_RS04060 - molecular chaperone DnaJ, at 52,256 to 53,437 _RS04060 HMPREF1181_RS04065: HMPREF1181_RS04065 - prolyl oligopeptidase family serine peptidase, at 53,491 to 54,281 _RS04065 HMPREF1181_RS04070: HMPREF1181_RS04070 - RagB/SusD family nutrient uptake outer membrane protein, at 54,443 to 56,032 _RS04070 Position (kb) 53 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 53.307 kb on + strand, within HMPREF1181_RS04060at 53.307 kb on + strand, within HMPREF1181_RS04060at 53.329 kb on + strandat 53.386 kb on + strandat 53.395 kb on + strandat 53.444 kb on + strandat 53.444 kb on + strandat 53.475 kb on - strandat 53.492 kb on + strandat 53.541 kb on + strandat 53.563 kb on - strandat 53.586 kb on + strand, within HMPREF1181_RS04065at 53.588 kb on + strand, within HMPREF1181_RS04065at 53.623 kb on - strand, within HMPREF1181_RS04065at 53.624 kb on + strand, within HMPREF1181_RS04065at 53.651 kb on - strand, within HMPREF1181_RS04065at 53.698 kb on + strand, within HMPREF1181_RS04065at 53.786 kb on + strand, within HMPREF1181_RS04065at 53.787 kb on - strand, within HMPREF1181_RS04065at 53.787 kb on - strand, within HMPREF1181_RS04065at 53.820 kb on + strand, within HMPREF1181_RS04065at 53.821 kb on - strand, within HMPREF1181_RS04065at 53.839 kb on + strand, within HMPREF1181_RS04065at 53.884 kb on - strand, within HMPREF1181_RS04065at 53.888 kb on - strand, within HMPREF1181_RS04065at 53.889 kb on + strand, within HMPREF1181_RS04065at 53.890 kb on - strand, within HMPREF1181_RS04065at 53.892 kb on + strand, within HMPREF1181_RS04065at 53.893 kb on - strand, within HMPREF1181_RS04065at 53.986 kb on + strand, within HMPREF1181_RS04065at 54.027 kb on + strand, within HMPREF1181_RS04065at 54.028 kb on - strand, within HMPREF1181_RS04065at 54.072 kb on - strand, within HMPREF1181_RS04065at 54.184 kb on + strand, within HMPREF1181_RS04065at 54.184 kb on + strand, within HMPREF1181_RS04065at 54.185 kb on - strand, within HMPREF1181_RS04065at 54.185 kb on - strand, within HMPREF1181_RS04065at 54.200 kb on - strand, within HMPREF1181_RS04065at 54.200 kb on - strand, within HMPREF1181_RS04065at 54.208 kb on + strandat 54.231 kb on + strandat 54.249 kb on + strandat 54.256 kb on - strandat 54.256 kb on - strandat 54.271 kb on - strandat 54.281 kb on + strandat 54.282 kb on - strandat 54.285 kb on + strandat 54.285 kb on + strandat 54.285 kb on + strandat 54.286 kb on - strandat 54.286 kb on - strandat 54.308 kb on + strandat 54.311 kb on + strandat 54.317 kb on - strandat 54.333 kb on - strandat 54.334 kb on + strandat 54.361 kb on - strandat 54.361 kb on - strandat 54.400 kb on - strandat 54.400 kb on - strandat 54.407 kb on + strandat 54.408 kb on - strandat 54.422 kb on + strandat 54.427 kb on - strandat 54.430 kb on - strandat 54.445 kb on - strandat 54.467 kb on - strandat 54.518 kb on - strandat 54.518 kb on - strandat 54.561 kb on + strandat 54.561 kb on + strandat 54.626 kb on - strand, within HMPREF1181_RS04070at 54.627 kb on + strand, within HMPREF1181_RS04070at 54.628 kb on - strand, within HMPREF1181_RS04070at 54.675 kb on - strand, within HMPREF1181_RS04070at 54.687 kb on - strand, within HMPREF1181_RS04070at 54.718 kb on + strand, within HMPREF1181_RS04070at 54.718 kb on + strand, within HMPREF1181_RS04070at 54.797 kb on + strand, within HMPREF1181_RS04070at 54.801 kb on - strand, within HMPREF1181_RS04070at 54.821 kb on - strand, within HMPREF1181_RS04070at 54.843 kb on + strand, within HMPREF1181_RS04070at 54.843 kb on + strand, within HMPREF1181_RS04070at 54.844 kb on - strand, within HMPREF1181_RS04070at 54.875 kb on - strand, within HMPREF1181_RS04070at 54.948 kb on + strand, within HMPREF1181_RS04070at 54.955 kb on + strand, within HMPREF1181_RS04070at 54.955 kb on + strand, within HMPREF1181_RS04070at 54.956 kb on - strand, within HMPREF1181_RS04070at 54.958 kb on + strand, within HMPREF1181_RS04070at 54.964 kb on - strand, within HMPREF1181_RS04070at 54.964 kb on - strand, within HMPREF1181_RS04070at 55.010 kb on - strand, within HMPREF1181_RS04070at 55.028 kb on - strand, within HMPREF1181_RS04070at 55.099 kb on - strand, within HMPREF1181_RS04070at 55.128 kb on + strand, within HMPREF1181_RS04070at 55.129 kb on - strand, within HMPREF1181_RS04070at 55.129 kb on - strand, within HMPREF1181_RS04070at 55.130 kb on + strand, within HMPREF1181_RS04070at 55.130 kb on + strand, within HMPREF1181_RS04070at 55.130 kb on + strand, within HMPREF1181_RS04070at 55.131 kb on - strand, within HMPREF1181_RS04070at 55.179 kb on - strand, within HMPREF1181_RS04070at 55.181 kb on - strand, within HMPREF1181_RS04070at 55.193 kb on - strand, within HMPREF1181_RS04070

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Per-strain Table

Position Strand Gene LocusTag Fraction Yeast Extract 2.5 mg/mL (C) complex media
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53,307 + HMPREF1181_RS04060 0.89 +0.9
53,307 + HMPREF1181_RS04060 0.89 -0.8
53,329 + -0.4
53,386 + +0.1
53,395 + +0.5
53,444 + +0.5
53,444 + -2.2
53,475 - -0.6
53,492 + -1.4
53,541 + +0.0
53,563 - -2.2
53,586 + HMPREF1181_RS04065 0.12 -0.4
53,588 + HMPREF1181_RS04065 0.12 -0.1
53,623 - HMPREF1181_RS04065 0.17 -0.6
53,624 + HMPREF1181_RS04065 0.17 +0.9
53,651 - HMPREF1181_RS04065 0.20 -0.8
53,698 + HMPREF1181_RS04065 0.26 +0.9
53,786 + HMPREF1181_RS04065 0.37 +0.0
53,787 - HMPREF1181_RS04065 0.37 +0.5
53,787 - HMPREF1181_RS04065 0.37 -0.2
53,820 + HMPREF1181_RS04065 0.42 -0.0
53,821 - HMPREF1181_RS04065 0.42 +0.5
53,839 + HMPREF1181_RS04065 0.44 +0.5
53,884 - HMPREF1181_RS04065 0.50 -0.6
53,888 - HMPREF1181_RS04065 0.50 -0.6
53,889 + HMPREF1181_RS04065 0.50 +1.5
53,890 - HMPREF1181_RS04065 0.50 +0.0
53,892 + HMPREF1181_RS04065 0.51 -1.0
53,893 - HMPREF1181_RS04065 0.51 -0.4
53,986 + HMPREF1181_RS04065 0.63 +1.4
54,027 + HMPREF1181_RS04065 0.68 -1.0
54,028 - HMPREF1181_RS04065 0.68 -0.4
54,072 - HMPREF1181_RS04065 0.73 -0.7
54,184 + HMPREF1181_RS04065 0.88 +0.3
54,184 + HMPREF1181_RS04065 0.88 -0.0
54,185 - HMPREF1181_RS04065 0.88 -0.9
54,185 - HMPREF1181_RS04065 0.88 +1.2
54,200 - HMPREF1181_RS04065 0.90 +0.9
54,200 - HMPREF1181_RS04065 0.90 +0.3
54,208 + +0.1
54,231 + -0.8
54,249 + -1.1
54,256 - -3.1
54,256 - -0.6
54,271 - -0.4
54,281 + -0.8
54,282 - -0.6
54,285 + -2.8
54,285 + +0.4
54,285 + -0.1
54,286 - +0.2
54,286 - +0.5
54,308 + +1.1
54,311 + -0.2
54,317 - +0.6
54,333 - +0.4
54,334 + -0.4
54,361 - -0.0
54,361 - -2.2
54,400 - -0.2
54,400 - +0.6
54,407 + +0.2
54,408 - +1.1
54,422 + +0.1
54,427 - +0.9
54,430 - +0.2
54,445 - +0.9
54,467 - -1.2
54,518 - -0.0
54,518 - -0.4
54,561 + -0.3
54,561 + +0.5
54,626 - HMPREF1181_RS04070 0.12 +0.8
54,627 + HMPREF1181_RS04070 0.12 -2.0
54,628 - HMPREF1181_RS04070 0.12 +1.7
54,675 - HMPREF1181_RS04070 0.15 -1.1
54,687 - HMPREF1181_RS04070 0.15 -0.0
54,718 + HMPREF1181_RS04070 0.17 -1.9
54,718 + HMPREF1181_RS04070 0.17 +0.4
54,797 + HMPREF1181_RS04070 0.22 -0.1
54,801 - HMPREF1181_RS04070 0.23 +0.4
54,821 - HMPREF1181_RS04070 0.24 +0.6
54,843 + HMPREF1181_RS04070 0.25 +0.2
54,843 + HMPREF1181_RS04070 0.25 +0.2
54,844 - HMPREF1181_RS04070 0.25 +0.3
54,875 - HMPREF1181_RS04070 0.27 -0.0
54,948 + HMPREF1181_RS04070 0.32 -0.3
54,955 + HMPREF1181_RS04070 0.32 +1.8
54,955 + HMPREF1181_RS04070 0.32 -0.4
54,956 - HMPREF1181_RS04070 0.32 -0.4
54,958 + HMPREF1181_RS04070 0.32 -0.8
54,964 - HMPREF1181_RS04070 0.33 +0.6
54,964 - HMPREF1181_RS04070 0.33 -0.0
55,010 - HMPREF1181_RS04070 0.36 -0.3
55,028 - HMPREF1181_RS04070 0.37 -0.7
55,099 - HMPREF1181_RS04070 0.41 +0.1
55,128 + HMPREF1181_RS04070 0.43 -0.5
55,129 - HMPREF1181_RS04070 0.43 -0.9
55,129 - HMPREF1181_RS04070 0.43 -0.3
55,130 + HMPREF1181_RS04070 0.43 +0.1
55,130 + HMPREF1181_RS04070 0.43 +1.4
55,130 + HMPREF1181_RS04070 0.43 -0.6
55,131 - HMPREF1181_RS04070 0.43 -1.5
55,179 - HMPREF1181_RS04070 0.46 +0.2
55,181 - HMPREF1181_RS04070 0.46 -0.5
55,193 - HMPREF1181_RS04070 0.47 +0.7

Or see this region's nucleotide sequence