Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS02090

Experiment: Yeast Extract 2.5 mg/mL (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS02080 and HMPREF1181_RS02085 overlap by 11 nucleotidesHMPREF1181_RS02085 and HMPREF1181_RS02090 overlap by 1 nucleotidesHMPREF1181_RS02090 and HMPREF1181_RS02095 are separated by 91 nucleotides HMPREF1181_RS02080: HMPREF1181_RS02080 - deoxyribose-phosphate aldolase, at 512,289 to 513,191 _RS02080 HMPREF1181_RS02085: HMPREF1181_RS02085 - nucleotide pyrophosphohydrolase, at 513,181 to 513,516 _RS02085 HMPREF1181_RS02090: HMPREF1181_RS02090 - D-tyrosyl-tRNA(Tyr) deacylase, at 513,516 to 513,968 _RS02090 HMPREF1181_RS02095: HMPREF1181_RS02095 - excinuclease ABC subunit UvrC, at 514,060 to 515,880 _RS02095 Position (kb) 513 514Strain fitness (log2 ratio) -3 -2 -1 0 1at 512.587 kb on + strand, within HMPREF1181_RS02080at 512.716 kb on + strand, within HMPREF1181_RS02080at 512.748 kb on + strand, within HMPREF1181_RS02080at 512.748 kb on + strand, within HMPREF1181_RS02080at 512.758 kb on - strand, within HMPREF1181_RS02080at 512.800 kb on - strand, within HMPREF1181_RS02080at 512.879 kb on + strand, within HMPREF1181_RS02080at 512.890 kb on - strand, within HMPREF1181_RS02080at 512.910 kb on + strand, within HMPREF1181_RS02080at 512.910 kb on + strand, within HMPREF1181_RS02080at 512.911 kb on - strand, within HMPREF1181_RS02080at 513.006 kb on - strand, within HMPREF1181_RS02080at 513.139 kb on + strandat 513.140 kb on - strandat 513.161 kb on - strandat 513.161 kb on - strandat 513.204 kb on + strandat 513.216 kb on + strand, within HMPREF1181_RS02085at 513.216 kb on + strand, within HMPREF1181_RS02085at 513.217 kb on - strand, within HMPREF1181_RS02085at 513.380 kb on + strand, within HMPREF1181_RS02085at 513.460 kb on + strand, within HMPREF1181_RS02085at 513.461 kb on - strand, within HMPREF1181_RS02085at 513.461 kb on - strand, within HMPREF1181_RS02085at 513.461 kb on - strand, within HMPREF1181_RS02085at 513.518 kb on - strandat 513.573 kb on + strand, within HMPREF1181_RS02090at 513.573 kb on + strand, within HMPREF1181_RS02090at 513.582 kb on - strand, within HMPREF1181_RS02090at 513.602 kb on + strand, within HMPREF1181_RS02090at 513.607 kb on - strand, within HMPREF1181_RS02090at 513.607 kb on - strand, within HMPREF1181_RS02090at 513.691 kb on + strand, within HMPREF1181_RS02090at 513.691 kb on + strand, within HMPREF1181_RS02090at 513.692 kb on - strand, within HMPREF1181_RS02090at 513.732 kb on - strand, within HMPREF1181_RS02090at 513.779 kb on + strand, within HMPREF1181_RS02090at 513.780 kb on - strand, within HMPREF1181_RS02090at 513.786 kb on - strand, within HMPREF1181_RS02090at 513.871 kb on - strand, within HMPREF1181_RS02090at 513.887 kb on + strand, within HMPREF1181_RS02090at 513.888 kb on - strand, within HMPREF1181_RS02090at 513.954 kb on + strandat 513.955 kb on - strandat 513.957 kb on - strandat 513.960 kb on + strandat 513.961 kb on - strandat 513.973 kb on + strandat 514.061 kb on + strandat 514.228 kb on + strandat 514.229 kb on - strandat 514.279 kb on + strand, within HMPREF1181_RS02095at 514.279 kb on + strand, within HMPREF1181_RS02095at 514.292 kb on - strand, within HMPREF1181_RS02095at 514.479 kb on + strand, within HMPREF1181_RS02095at 514.479 kb on + strand, within HMPREF1181_RS02095at 514.534 kb on + strand, within HMPREF1181_RS02095at 514.534 kb on + strand, within HMPREF1181_RS02095at 514.535 kb on - strand, within HMPREF1181_RS02095at 514.588 kb on - strand, within HMPREF1181_RS02095at 514.589 kb on + strand, within HMPREF1181_RS02095at 514.589 kb on + strand, within HMPREF1181_RS02095at 514.589 kb on + strand, within HMPREF1181_RS02095at 514.799 kb on + strand, within HMPREF1181_RS02095

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Per-strain Table

Position Strand Gene LocusTag Fraction Yeast Extract 2.5 mg/mL (C) complex media
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512,587 + HMPREF1181_RS02080 0.33 -2.1
512,716 + HMPREF1181_RS02080 0.47 -2.9
512,748 + HMPREF1181_RS02080 0.51 -1.6
512,748 + HMPREF1181_RS02080 0.51 -2.0
512,758 - HMPREF1181_RS02080 0.52 -2.5
512,800 - HMPREF1181_RS02080 0.57 +1.0
512,879 + HMPREF1181_RS02080 0.65 -0.6
512,890 - HMPREF1181_RS02080 0.67 -1.8
512,910 + HMPREF1181_RS02080 0.69 -0.6
512,910 + HMPREF1181_RS02080 0.69 -0.2
512,911 - HMPREF1181_RS02080 0.69 +0.5
513,006 - HMPREF1181_RS02080 0.79 -1.3
513,139 + +0.6
513,140 - -0.9
513,161 - -2.0
513,161 - +1.6
513,204 + +0.0
513,216 + HMPREF1181_RS02085 0.10 +0.3
513,216 + HMPREF1181_RS02085 0.10 +0.4
513,217 - HMPREF1181_RS02085 0.11 -0.4
513,380 + HMPREF1181_RS02085 0.59 -0.4
513,460 + HMPREF1181_RS02085 0.83 -0.2
513,461 - HMPREF1181_RS02085 0.83 -0.1
513,461 - HMPREF1181_RS02085 0.83 -2.3
513,461 - HMPREF1181_RS02085 0.83 +0.3
513,518 - +1.3
513,573 + HMPREF1181_RS02090 0.13 +0.2
513,573 + HMPREF1181_RS02090 0.13 +0.6
513,582 - HMPREF1181_RS02090 0.15 -0.8
513,602 + HMPREF1181_RS02090 0.19 +0.7
513,607 - HMPREF1181_RS02090 0.20 +0.2
513,607 - HMPREF1181_RS02090 0.20 +1.1
513,691 + HMPREF1181_RS02090 0.39 -0.9
513,691 + HMPREF1181_RS02090 0.39 -0.6
513,692 - HMPREF1181_RS02090 0.39 +0.9
513,732 - HMPREF1181_RS02090 0.48 +0.6
513,779 + HMPREF1181_RS02090 0.58 -0.1
513,780 - HMPREF1181_RS02090 0.58 +0.0
513,786 - HMPREF1181_RS02090 0.60 +0.9
513,871 - HMPREF1181_RS02090 0.78 +0.9
513,887 + HMPREF1181_RS02090 0.82 -1.1
513,888 - HMPREF1181_RS02090 0.82 +0.4
513,954 + -1.0
513,955 - +0.7
513,957 - -0.3
513,960 + +0.2
513,961 - -0.1
513,973 + +0.4
514,061 + -0.4
514,228 + +0.1
514,229 - -1.1
514,279 + HMPREF1181_RS02095 0.12 -0.6
514,279 + HMPREF1181_RS02095 0.12 -0.6
514,292 - HMPREF1181_RS02095 0.13 +0.3
514,479 + HMPREF1181_RS02095 0.23 -0.9
514,479 + HMPREF1181_RS02095 0.23 -0.2
514,534 + HMPREF1181_RS02095 0.26 -0.1
514,534 + HMPREF1181_RS02095 0.26 -0.4
514,535 - HMPREF1181_RS02095 0.26 +0.8
514,588 - HMPREF1181_RS02095 0.29 +0.6
514,589 + HMPREF1181_RS02095 0.29 +1.0
514,589 + HMPREF1181_RS02095 0.29 +0.7
514,589 + HMPREF1181_RS02095 0.29 -0.1
514,799 + HMPREF1181_RS02095 0.41 -1.7

Or see this region's nucleotide sequence