Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25930

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS25930 and LU632_RS25935 are separated by 56 nucleotides LU632_RS25930: LU632_RS25930 - acyltransferase, at 1 to 1,116 _RS25930 LU632_RS25935: LU632_RS25935 - phage tail protein, at 1,173 to 2,048 _RS25935 Position (kb) 0 1 2Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 0.044 kb on + strandat 0.063 kb on + strandat 0.064 kb on - strandat 0.105 kb on + strandat 0.106 kb on - strandat 0.113 kb on + strand, within LU632_RS25930at 0.125 kb on + strand, within LU632_RS25930at 0.141 kb on + strand, within LU632_RS25930at 0.187 kb on + strand, within LU632_RS25930at 0.187 kb on + strand, within LU632_RS25930at 0.188 kb on - strand, within LU632_RS25930at 0.188 kb on - strand, within LU632_RS25930at 0.240 kb on + strand, within LU632_RS25930at 0.241 kb on - strand, within LU632_RS25930at 0.258 kb on - strand, within LU632_RS25930at 0.268 kb on + strand, within LU632_RS25930at 0.269 kb on - strand, within LU632_RS25930at 0.271 kb on + strand, within LU632_RS25930at 0.271 kb on + strand, within LU632_RS25930at 0.271 kb on + strand, within LU632_RS25930at 0.271 kb on + strand, within LU632_RS25930at 0.272 kb on - strand, within LU632_RS25930at 0.272 kb on - strand, within LU632_RS25930at 0.275 kb on + strand, within LU632_RS25930at 0.275 kb on + strand, within LU632_RS25930at 0.276 kb on - strand, within LU632_RS25930at 0.276 kb on - strand, within LU632_RS25930at 0.316 kb on - strand, within LU632_RS25930at 0.374 kb on - strand, within LU632_RS25930at 0.395 kb on + strand, within LU632_RS25930at 0.396 kb on - strand, within LU632_RS25930at 0.419 kb on - strand, within LU632_RS25930at 0.419 kb on - strand, within LU632_RS25930at 0.443 kb on - strand, within LU632_RS25930at 0.480 kb on - strand, within LU632_RS25930at 0.480 kb on - strand, within LU632_RS25930at 0.499 kb on - strand, within LU632_RS25930at 0.543 kb on + strand, within LU632_RS25930at 0.543 kb on + strand, within LU632_RS25930at 0.543 kb on + strand, within LU632_RS25930at 0.544 kb on - strand, within LU632_RS25930at 0.544 kb on - strand, within LU632_RS25930at 0.544 kb on - strand, within LU632_RS25930at 0.544 kb on - strand, within LU632_RS25930at 0.544 kb on - strand, within LU632_RS25930at 0.544 kb on - strand, within LU632_RS25930at 0.624 kb on - strand, within LU632_RS25930at 0.660 kb on + strand, within LU632_RS25930at 0.661 kb on - strand, within LU632_RS25930at 0.661 kb on - strand, within LU632_RS25930at 0.661 kb on - strand, within LU632_RS25930at 0.661 kb on - strand, within LU632_RS25930at 0.664 kb on + strand, within LU632_RS25930at 0.708 kb on - strand, within LU632_RS25930at 0.766 kb on + strand, within LU632_RS25930at 0.862 kb on - strand, within LU632_RS25930at 0.894 kb on - strand, within LU632_RS25930at 1.021 kb on - strandat 1.024 kb on + strandat 1.185 kb on - strandat 1.187 kb on - strandat 1.197 kb on + strandat 1.197 kb on + strandat 1.242 kb on + strandat 1.242 kb on + strandat 1.242 kb on + strandat 1.242 kb on + strandat 1.243 kb on - strandat 1.243 kb on - strandat 1.244 kb on + strandat 1.253 kb on + strandat 1.253 kb on + strandat 1.254 kb on - strandat 1.274 kb on + strand, within LU632_RS25935at 1.275 kb on - strand, within LU632_RS25935at 1.275 kb on - strand, within LU632_RS25935at 1.275 kb on - strand, within LU632_RS25935at 1.301 kb on + strand, within LU632_RS25935at 1.301 kb on + strand, within LU632_RS25935at 1.301 kb on + strand, within LU632_RS25935at 1.301 kb on + strand, within LU632_RS25935at 1.301 kb on + strand, within LU632_RS25935at 1.301 kb on + strand, within LU632_RS25935at 1.301 kb on + strand, within LU632_RS25935at 1.302 kb on - strand, within LU632_RS25935at 1.302 kb on - strand, within LU632_RS25935at 1.302 kb on - strand, within LU632_RS25935at 1.302 kb on - strand, within LU632_RS25935at 1.302 kb on - strand, within LU632_RS25935at 1.349 kb on + strand, within LU632_RS25935at 1.349 kb on + strand, within LU632_RS25935at 1.401 kb on + strand, within LU632_RS25935at 1.401 kb on + strand, within LU632_RS25935at 1.401 kb on + strand, within LU632_RS25935at 1.401 kb on + strand, within LU632_RS25935at 1.401 kb on + strand, within LU632_RS25935at 1.402 kb on - strand, within LU632_RS25935at 1.402 kb on - strand, within LU632_RS25935at 1.402 kb on - strand, within LU632_RS25935at 1.412 kb on + strand, within LU632_RS25935at 1.412 kb on - strand, within LU632_RS25935at 1.413 kb on - strand, within LU632_RS25935at 1.419 kb on + strand, within LU632_RS25935at 1.455 kb on + strand, within LU632_RS25935at 1.455 kb on + strand, within LU632_RS25935at 1.455 kb on + strand, within LU632_RS25935at 1.455 kb on + strand, within LU632_RS25935at 1.455 kb on + strand, within LU632_RS25935at 1.455 kb on + strand, within LU632_RS25935at 1.455 kb on + strand, within LU632_RS25935at 1.455 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.456 kb on - strand, within LU632_RS25935at 1.457 kb on + strand, within LU632_RS25935at 1.457 kb on + strand, within LU632_RS25935at 1.457 kb on + strand, within LU632_RS25935at 1.457 kb on + strand, within LU632_RS25935at 1.457 kb on + strand, within LU632_RS25935at 1.458 kb on - strand, within LU632_RS25935at 1.458 kb on - strand, within LU632_RS25935at 1.458 kb on - strand, within LU632_RS25935at 1.458 kb on - strand, within LU632_RS25935at 1.460 kb on + strand, within LU632_RS25935at 1.460 kb on + strand, within LU632_RS25935at 1.460 kb on + strand, within LU632_RS25935at 1.461 kb on - strand, within LU632_RS25935at 1.481 kb on + strand, within LU632_RS25935at 1.481 kb on + strand, within LU632_RS25935at 1.481 kb on + strand, within LU632_RS25935at 1.482 kb on - strand, within LU632_RS25935at 1.556 kb on + strand, within LU632_RS25935at 1.556 kb on + strand, within LU632_RS25935at 1.557 kb on - strand, within LU632_RS25935at 1.557 kb on - strand, within LU632_RS25935at 1.592 kb on + strand, within LU632_RS25935at 1.655 kb on + strand, within LU632_RS25935at 1.655 kb on + strand, within LU632_RS25935at 1.655 kb on + strand, within LU632_RS25935at 1.655 kb on + strand, within LU632_RS25935at 1.655 kb on + strand, within LU632_RS25935at 1.656 kb on - strand, within LU632_RS25935at 1.656 kb on - strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.708 kb on + strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.709 kb on - strand, within LU632_RS25935at 1.718 kb on + strand, within LU632_RS25935at 1.718 kb on + strand, within LU632_RS25935at 1.718 kb on + strand, within LU632_RS25935at 1.719 kb on - strand, within LU632_RS25935at 1.719 kb on - strand, within LU632_RS25935at 1.719 kb on - strand, within LU632_RS25935at 1.749 kb on - strand, within LU632_RS25935at 1.749 kb on - strand, within LU632_RS25935at 1.749 kb on - strand, within LU632_RS25935at 1.784 kb on - strand, within LU632_RS25935at 1.784 kb on - strand, within LU632_RS25935at 1.784 kb on - strand, within LU632_RS25935at 1.820 kb on - strand, within LU632_RS25935at 1.934 kb on + strand, within LU632_RS25935at 2.013 kb on - strandat 2.013 kb on - strandat 2.015 kb on + strandat 2.016 kb on - strandat 2.076 kb on - strandat 2.076 kb on - strandat 2.076 kb on - strandat 2.076 kb on - strandat 2.076 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
remove
44 + -2.9
63 + -2.9
64 - +0.2
105 + -0.1
106 - +0.9
113 + LU632_RS25930 0.10 -1.4
125 + LU632_RS25930 0.11 -3.9
141 + LU632_RS25930 0.13 -4.1
187 + LU632_RS25930 0.17 -1.6
187 + LU632_RS25930 0.17 +0.8
188 - LU632_RS25930 0.17 -1.0
188 - LU632_RS25930 0.17 -2.3
240 + LU632_RS25930 0.21 -1.6
241 - LU632_RS25930 0.22 -1.6
258 - LU632_RS25930 0.23 +2.5
268 + LU632_RS25930 0.24 -5.2
269 - LU632_RS25930 0.24 -6.0
271 + LU632_RS25930 0.24 -1.8
271 + LU632_RS25930 0.24 -1.9
271 + LU632_RS25930 0.24 -2.2
271 + LU632_RS25930 0.24 -1.0
272 - LU632_RS25930 0.24 -4.1
272 - LU632_RS25930 0.24 -0.7
275 + LU632_RS25930 0.25 -0.1
275 + LU632_RS25930 0.25 -0.1
276 - LU632_RS25930 0.25 -1.1
276 - LU632_RS25930 0.25 -4.2
316 - LU632_RS25930 0.28 -0.3
374 - LU632_RS25930 0.33 -4.1
395 + LU632_RS25930 0.35 -3.4
396 - LU632_RS25930 0.35 -1.6
419 - LU632_RS25930 0.37 -2.1
419 - LU632_RS25930 0.37 -4.1
443 - LU632_RS25930 0.40 +1.1
480 - LU632_RS25930 0.43 -2.0
480 - LU632_RS25930 0.43 -0.4
499 - LU632_RS25930 0.45 -1.5
543 + LU632_RS25930 0.49 -0.1
543 + LU632_RS25930 0.49 +0.5
543 + LU632_RS25930 0.49 -2.1
544 - LU632_RS25930 0.49 -4.5
544 - LU632_RS25930 0.49 -1.2
544 - LU632_RS25930 0.49 -4.5
544 - LU632_RS25930 0.49 -1.2
544 - LU632_RS25930 0.49 -1.9
544 - LU632_RS25930 0.49 -2.5
624 - LU632_RS25930 0.56 -4.1
660 + LU632_RS25930 0.59 -5.0
661 - LU632_RS25930 0.59 -1.6
661 - LU632_RS25930 0.59 -0.4
661 - LU632_RS25930 0.59 -0.8
661 - LU632_RS25930 0.59 -5.1
664 + LU632_RS25930 0.59 -2.3
708 - LU632_RS25930 0.63 -0.1
766 + LU632_RS25930 0.69 -5.3
862 - LU632_RS25930 0.77 -2.8
894 - LU632_RS25930 0.80 -1.2
1,021 - -1.6
1,024 + -4.5
1,185 - +0.8
1,187 - +2.7
1,197 + +0.1
1,197 + +1.3
1,242 + +3.6
1,242 + -0.3
1,242 + -2.1
1,242 + -1.1
1,243 - -2.4
1,243 - +2.0
1,244 + -0.1
1,253 + -4.5
1,253 + -3.8
1,254 - -0.1
1,274 + LU632_RS25935 0.12 -1.1
1,275 - LU632_RS25935 0.12 -0.1
1,275 - LU632_RS25935 0.12 -3.8
1,275 - LU632_RS25935 0.12 +1.0
1,301 + LU632_RS25935 0.15 +1.7
1,301 + LU632_RS25935 0.15 -2.1
1,301 + LU632_RS25935 0.15 -2.3
1,301 + LU632_RS25935 0.15 +0.2
1,301 + LU632_RS25935 0.15 +1.8
1,301 + LU632_RS25935 0.15 +0.9
1,301 + LU632_RS25935 0.15 -0.2
1,302 - LU632_RS25935 0.15 +0.7
1,302 - LU632_RS25935 0.15 +0.6
1,302 - LU632_RS25935 0.15 +0.4
1,302 - LU632_RS25935 0.15 -2.5
1,302 - LU632_RS25935 0.15 -2.1
1,349 + LU632_RS25935 0.20 -3.0
1,349 + LU632_RS25935 0.20 -0.4
1,401 + LU632_RS25935 0.26 +1.8
1,401 + LU632_RS25935 0.26 +1.7
1,401 + LU632_RS25935 0.26 -0.5
1,401 + LU632_RS25935 0.26 +0.6
1,401 + LU632_RS25935 0.26 -4.0
1,402 - LU632_RS25935 0.26 -0.4
1,402 - LU632_RS25935 0.26 -2.1
1,402 - LU632_RS25935 0.26 -2.9
1,412 + LU632_RS25935 0.27 -0.7
1,412 - LU632_RS25935 0.27 -2.1
1,413 - LU632_RS25935 0.27 -0.0
1,419 + LU632_RS25935 0.28 -0.1
1,455 + LU632_RS25935 0.32 +1.9
1,455 + LU632_RS25935 0.32 -0.2
1,455 + LU632_RS25935 0.32 -0.1
1,455 + LU632_RS25935 0.32 -2.4
1,455 + LU632_RS25935 0.32 -4.4
1,455 + LU632_RS25935 0.32 -2.4
1,455 + LU632_RS25935 0.32 -3.1
1,455 - LU632_RS25935 0.32 +0.9
1,456 - LU632_RS25935 0.32 +0.1
1,456 - LU632_RS25935 0.32 +2.2
1,456 - LU632_RS25935 0.32 +0.4
1,456 - LU632_RS25935 0.32 +0.7
1,456 - LU632_RS25935 0.32 +1.2
1,456 - LU632_RS25935 0.32 +0.5
1,456 - LU632_RS25935 0.32 -0.0
1,456 - LU632_RS25935 0.32 -3.2
1,456 - LU632_RS25935 0.32 -0.8
1,457 + LU632_RS25935 0.32 +0.1
1,457 + LU632_RS25935 0.32 -1.1
1,457 + LU632_RS25935 0.32 -0.1
1,457 + LU632_RS25935 0.32 -3.6
1,457 + LU632_RS25935 0.32 +0.1
1,458 - LU632_RS25935 0.33 +1.1
1,458 - LU632_RS25935 0.33 +0.3
1,458 - LU632_RS25935 0.33 +0.0
1,458 - LU632_RS25935 0.33 +3.3
1,460 + LU632_RS25935 0.33 -2.0
1,460 + LU632_RS25935 0.33 +2.8
1,460 + LU632_RS25935 0.33 -1.3
1,461 - LU632_RS25935 0.33 +0.8
1,481 + LU632_RS25935 0.35 -0.4
1,481 + LU632_RS25935 0.35 +1.9
1,481 + LU632_RS25935 0.35 -0.1
1,482 - LU632_RS25935 0.35 -1.1
1,556 + LU632_RS25935 0.44 +0.3
1,556 + LU632_RS25935 0.44 -1.1
1,557 - LU632_RS25935 0.44 +0.7
1,557 - LU632_RS25935 0.44 +1.8
1,592 + LU632_RS25935 0.48 -1.2
1,655 + LU632_RS25935 0.55 +0.3
1,655 + LU632_RS25935 0.55 +0.0
1,655 + LU632_RS25935 0.55 -1.1
1,655 + LU632_RS25935 0.55 -0.1
1,655 + LU632_RS25935 0.55 +1.3
1,656 - LU632_RS25935 0.55 -3.8
1,656 - LU632_RS25935 0.55 -3.1
1,708 + LU632_RS25935 0.61 -0.2
1,708 + LU632_RS25935 0.61 -4.5
1,708 + LU632_RS25935 0.61 -2.1
1,708 + LU632_RS25935 0.61 -4.4
1,708 + LU632_RS25935 0.61 +1.9
1,708 + LU632_RS25935 0.61 -5.2
1,708 + LU632_RS25935 0.61 -0.1
1,708 + LU632_RS25935 0.61 +0.5
1,708 + LU632_RS25935 0.61 -0.4
1,708 + LU632_RS25935 0.61 -4.1
1,708 + LU632_RS25935 0.61 -3.8
1,709 - LU632_RS25935 0.61 -0.6
1,709 - LU632_RS25935 0.61 +0.2
1,709 - LU632_RS25935 0.61 -3.4
1,709 - LU632_RS25935 0.61 -0.8
1,709 - LU632_RS25935 0.61 -3.2
1,709 - LU632_RS25935 0.61 -0.1
1,709 - LU632_RS25935 0.61 -2.5
1,709 - LU632_RS25935 0.61 +0.1
1,709 - LU632_RS25935 0.61 +1.3
1,709 - LU632_RS25935 0.61 -0.7
1,709 - LU632_RS25935 0.61 -0.7
1,709 - LU632_RS25935 0.61 +0.0
1,709 - LU632_RS25935 0.61 -2.6
1,709 - LU632_RS25935 0.61 +0.9
1,709 - LU632_RS25935 0.61 -1.6
1,709 - LU632_RS25935 0.61 -2.1
1,709 - LU632_RS25935 0.61 +0.2
1,709 - LU632_RS25935 0.61 +0.6
1,709 - LU632_RS25935 0.61 -4.0
1,709 - LU632_RS25935 0.61 -2.4
1,709 - LU632_RS25935 0.61 -0.6
1,709 - LU632_RS25935 0.61 -0.2
1,718 + LU632_RS25935 0.62 +0.9
1,718 + LU632_RS25935 0.62 +0.1
1,718 + LU632_RS25935 0.62 -3.4
1,719 - LU632_RS25935 0.62 +0.7
1,719 - LU632_RS25935 0.62 +0.1
1,719 - LU632_RS25935 0.62 +0.9
1,749 - LU632_RS25935 0.66 -0.6
1,749 - LU632_RS25935 0.66 +0.6
1,749 - LU632_RS25935 0.66 -3.1
1,784 - LU632_RS25935 0.70 +1.5
1,784 - LU632_RS25935 0.70 +0.1
1,784 - LU632_RS25935 0.70 +0.1
1,820 - LU632_RS25935 0.74 +0.4
1,934 + LU632_RS25935 0.87 +1.0
2,013 - -0.0
2,013 - -2.1
2,015 + -4.1
2,016 - +0.6
2,076 - -1.6
2,076 - +1.1
2,076 - +1.9
2,076 - +0.0
2,076 - -1.5

Or see this region's nucleotide sequence