Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25335 and LU632_RS25340 are separated by 7 nucleotides LU632_RS25340 and LU632_RS25345 are separated by 100 nucleotides LU632_RS25345 and LU632_RS25350 are separated by 15 nucleotides LU632_RS25350 and LU632_RS25355 are separated by 60 nucleotides
LU632_RS25335: LU632_RS25335 - hypothetical protein, at 782 to 3,604
_RS25335
LU632_RS25340: LU632_RS25340 - hypothetical protein, at 3,612 to 4,055
_RS25340
LU632_RS25345: LU632_RS25345 - DotI/IcmL family type IV secretion protein, at 4,156 to 4,776
_RS25345
LU632_RS25350: LU632_RS25350 - hypothetical protein, at 4,792 to 5,073
_RS25350
LU632_RS25355: LU632_RS25355 - DotH/IcmK family type IV secretion protein, at 5,134 to 5,799
_RS25355
Position (kb) 4
5 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 3.276 kb on + strand, within LU632_RS25335 at 3.617 kb on + strand at 3.708 kb on - strand, within LU632_RS25340 at 3.721 kb on - strand, within LU632_RS25340 at 3.804 kb on - strand, within LU632_RS25340 at 3.906 kb on + strand, within LU632_RS25340 at 3.907 kb on - strand, within LU632_RS25340 at 3.907 kb on - strand, within LU632_RS25340 at 3.940 kb on - strand, within LU632_RS25340 at 4.023 kb on - strand at 4.038 kb on + strand at 4.038 kb on + strand at 4.038 kb on + strand at 4.038 kb on + strand at 4.038 kb on + strand at 4.039 kb on - strand at 4.039 kb on - strand at 4.039 kb on - strand at 4.039 kb on - strand at 4.135 kb on + strand at 4.136 kb on - strand at 4.136 kb on - strand at 4.200 kb on + strand at 4.300 kb on + strand, within LU632_RS25345 at 4.443 kb on - strand, within LU632_RS25345 at 4.443 kb on - strand, within LU632_RS25345 at 4.487 kb on - strand, within LU632_RS25345 at 4.487 kb on - strand, within LU632_RS25345 at 4.489 kb on + strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345 at 4.490 kb on - strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.612 kb on + strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.613 kb on - strand, within LU632_RS25345 at 4.614 kb on + strand, within LU632_RS25345 at 4.614 kb on + strand, within LU632_RS25345 at 4.614 kb on + strand, within LU632_RS25345 at 4.615 kb on - strand, within LU632_RS25345 at 4.692 kb on + strand, within LU632_RS25345 at 4.977 kb on + strand, within LU632_RS25350 at 4.988 kb on + strand, within LU632_RS25350 at 5.272 kb on + strand, within LU632_RS25355 at 5.272 kb on + strand, within LU632_RS25355 at 5.275 kb on - strand, within LU632_RS25355 at 5.275 kb on - strand, within LU632_RS25355 at 5.578 kb on - strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.651 kb on - strand, within LU632_RS25355 at 5.651 kb on - strand, within LU632_RS25355 at 5.722 kb on + strand, within LU632_RS25355 at 5.722 kb on + strand, within LU632_RS25355 at 5.723 kb on - strand, within LU632_RS25355 at 5.723 kb on - strand, within LU632_RS25355
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 3,276 + LU632_RS25335 0.88 -0.9 3,617 + +0.6 3,708 - LU632_RS25340 0.22 -0.2 3,721 - LU632_RS25340 0.25 +1.0 3,804 - LU632_RS25340 0.43 -2.6 3,906 + LU632_RS25340 0.66 -1.8 3,907 - LU632_RS25340 0.66 -1.5 3,907 - LU632_RS25340 0.66 +0.1 3,940 - LU632_RS25340 0.74 -0.4 4,023 - +0.5 4,038 + -0.7 4,038 + +0.5 4,038 + -1.6 4,038 + +1.0 4,038 + +1.0 4,039 - -3.5 4,039 - +0.6 4,039 - +1.8 4,039 - -0.3 4,135 + -1.6 4,136 - -1.2 4,136 - -0.6 4,200 + +0.3 4,300 + LU632_RS25345 0.23 -2.6 4,443 - LU632_RS25345 0.46 +0.0 4,443 - LU632_RS25345 0.46 +0.5 4,487 - LU632_RS25345 0.53 -1.2 4,487 - LU632_RS25345 0.53 +0.8 4,489 + LU632_RS25345 0.54 +0.5 4,490 - LU632_RS25345 0.54 +0.8 4,490 - LU632_RS25345 0.54 +0.3 4,490 - LU632_RS25345 0.54 -0.5 4,612 + LU632_RS25345 0.73 -2.1 4,612 + LU632_RS25345 0.73 +1.1 4,612 + LU632_RS25345 0.73 +1.0 4,612 + LU632_RS25345 0.73 +0.3 4,613 - LU632_RS25345 0.74 +0.9 4,613 - LU632_RS25345 0.74 -2.0 4,613 - LU632_RS25345 0.74 +0.5 4,613 - LU632_RS25345 0.74 -1.2 4,613 - LU632_RS25345 0.74 -1.7 4,613 - LU632_RS25345 0.74 +1.6 4,613 - LU632_RS25345 0.74 +0.3 4,613 - LU632_RS25345 0.74 +0.0 4,614 + LU632_RS25345 0.74 -2.3 4,614 + LU632_RS25345 0.74 -0.6 4,614 + LU632_RS25345 0.74 +0.8 4,615 - LU632_RS25345 0.74 +0.9 4,692 + LU632_RS25345 0.86 -2.8 4,977 + LU632_RS25350 0.66 -1.3 4,988 + LU632_RS25350 0.70 +1.5 5,272 + LU632_RS25355 0.21 +0.7 5,272 + LU632_RS25355 0.21 +2.7 5,275 - LU632_RS25355 0.21 -3.0 5,275 - LU632_RS25355 0.21 -3.2 5,578 - LU632_RS25355 0.67 -1.0 5,650 + LU632_RS25355 0.77 -2.2 5,650 + LU632_RS25355 0.77 -4.3 5,650 + LU632_RS25355 0.77 -0.4 5,650 + LU632_RS25355 0.77 -1.6 5,650 + LU632_RS25355 0.77 -1.6 5,650 + LU632_RS25355 0.77 +0.4 5,651 - LU632_RS25355 0.78 +1.3 5,651 - LU632_RS25355 0.78 +3.8 5,722 + LU632_RS25355 0.88 -1.3 5,722 + LU632_RS25355 0.88 +0.3 5,723 - LU632_RS25355 0.88 +1.4 5,723 - LU632_RS25355 0.88 -0.3
Or see this region's nucleotide sequence