Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24685 and LU632_RS24690 overlap by 98 nucleotides LU632_RS24690 and ovoA are separated by 91 nucleotides ovoA and asnC are separated by 120 nucleotides asnC and LU632_RS24705 are separated by 88 nucleotides
LU632_RS24685: LU632_RS24685 - transposase zinc-binding domain-containing protein, at 4,702,033 to 4,702,581
_RS24685
LU632_RS24690: LU632_RS24690 - transposase, at 4,702,484 to 4,703,257
_RS24690
LU632_RS24695: ovoA - 5-histidylcysteine sulfoxide synthase, at 4,703,349 to 4,705,457
ovoA
LU632_RS24700: asnC - transcriptional regulator AsnC, at 4,705,578 to 4,706,039
asnC
LU632_RS24705: LU632_RS24705 - hypothetical protein, at 4,706,128 to 4,707,396
_RS24705
Position (kb) 4703
4704
4705
4706 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4703.493 kb on + strand at 4703.556 kb on + strand at 4703.561 kb on + strand, within ovoA at 4703.564 kb on + strand, within ovoA at 4703.564 kb on + strand, within ovoA at 4703.565 kb on - strand, within ovoA at 4703.598 kb on - strand, within ovoA at 4703.598 kb on - strand, within ovoA at 4703.674 kb on - strand, within ovoA at 4703.741 kb on + strand, within ovoA at 4703.823 kb on - strand, within ovoA at 4703.972 kb on - strand, within ovoA at 4704.081 kb on + strand, within ovoA at 4704.413 kb on + strand, within ovoA at 4704.414 kb on - strand, within ovoA at 4704.504 kb on - strand, within ovoA at 4704.538 kb on + strand, within ovoA at 4704.538 kb on + strand, within ovoA at 4704.538 kb on + strand, within ovoA at 4704.550 kb on - strand, within ovoA at 4704.550 kb on - strand, within ovoA at 4704.587 kb on + strand, within ovoA at 4704.596 kb on + strand, within ovoA at 4704.649 kb on - strand, within ovoA at 4704.690 kb on + strand, within ovoA at 4704.691 kb on - strand, within ovoA at 4704.732 kb on + strand, within ovoA at 4704.732 kb on + strand, within ovoA at 4704.759 kb on + strand, within ovoA at 4704.760 kb on - strand, within ovoA at 4704.804 kb on + strand, within ovoA at 4704.804 kb on + strand, within ovoA at 4704.804 kb on + strand, within ovoA at 4704.805 kb on - strand, within ovoA at 4704.805 kb on - strand, within ovoA at 4704.950 kb on + strand, within ovoA at 4704.994 kb on - strand, within ovoA at 4705.106 kb on + strand, within ovoA at 4705.196 kb on + strand, within ovoA at 4705.200 kb on - strand, within ovoA at 4705.200 kb on - strand, within ovoA at 4705.245 kb on + strand, within ovoA at 4705.245 kb on + strand, within ovoA at 4705.246 kb on - strand, within ovoA at 4705.248 kb on - strand at 4705.248 kb on - strand at 4705.248 kb on - strand at 4705.566 kb on + strand at 4705.566 kb on + strand at 4705.583 kb on - strand at 4705.622 kb on + strand at 4705.623 kb on - strand at 4705.654 kb on - strand, within asnC at 4705.802 kb on + strand, within asnC at 4705.878 kb on + strand, within asnC at 4705.878 kb on + strand, within asnC at 4705.879 kb on - strand, within asnC at 4706.031 kb on - strand at 4706.031 kb on - strand at 4706.080 kb on + strand at 4706.132 kb on + strand at 4706.132 kb on + strand at 4706.176 kb on - strand at 4706.231 kb on - strand at 4706.313 kb on + strand, within LU632_RS24705 at 4706.346 kb on + strand, within LU632_RS24705 at 4706.347 kb on - strand, within LU632_RS24705 at 4706.347 kb on - strand, within LU632_RS24705
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 4,703,493 + +0.3 4,703,556 + -1.1 4,703,561 + ovoA LU632_RS24695 0.10 -1.5 4,703,564 + ovoA LU632_RS24695 0.10 +0.9 4,703,564 + ovoA LU632_RS24695 0.10 -1.1 4,703,565 - ovoA LU632_RS24695 0.10 +0.4 4,703,598 - ovoA LU632_RS24695 0.12 +0.9 4,703,598 - ovoA LU632_RS24695 0.12 +0.8 4,703,674 - ovoA LU632_RS24695 0.15 -0.1 4,703,741 + ovoA LU632_RS24695 0.19 -0.5 4,703,823 - ovoA LU632_RS24695 0.22 -0.1 4,703,972 - ovoA LU632_RS24695 0.30 +0.2 4,704,081 + ovoA LU632_RS24695 0.35 +0.6 4,704,413 + ovoA LU632_RS24695 0.50 -1.0 4,704,414 - ovoA LU632_RS24695 0.50 +1.4 4,704,504 - ovoA LU632_RS24695 0.55 +0.2 4,704,538 + ovoA LU632_RS24695 0.56 -1.5 4,704,538 + ovoA LU632_RS24695 0.56 -0.1 4,704,538 + ovoA LU632_RS24695 0.56 -1.0 4,704,550 - ovoA LU632_RS24695 0.57 +2.9 4,704,550 - ovoA LU632_RS24695 0.57 -0.7 4,704,587 + ovoA LU632_RS24695 0.59 +4.3 4,704,596 + ovoA LU632_RS24695 0.59 -0.1 4,704,649 - ovoA LU632_RS24695 0.62 -1.1 4,704,690 + ovoA LU632_RS24695 0.64 +0.5 4,704,691 - ovoA LU632_RS24695 0.64 -2.7 4,704,732 + ovoA LU632_RS24695 0.66 +0.6 4,704,732 + ovoA LU632_RS24695 0.66 +0.7 4,704,759 + ovoA LU632_RS24695 0.67 -0.1 4,704,760 - ovoA LU632_RS24695 0.67 -0.1 4,704,804 + ovoA LU632_RS24695 0.69 +0.8 4,704,804 + ovoA LU632_RS24695 0.69 +0.6 4,704,804 + ovoA LU632_RS24695 0.69 -1.1 4,704,805 - ovoA LU632_RS24695 0.69 -0.0 4,704,805 - ovoA LU632_RS24695 0.69 -1.7 4,704,950 + ovoA LU632_RS24695 0.76 -0.3 4,704,994 - ovoA LU632_RS24695 0.78 +3.7 4,705,106 + ovoA LU632_RS24695 0.83 +1.8 4,705,196 + ovoA LU632_RS24695 0.88 +0.6 4,705,200 - ovoA LU632_RS24695 0.88 +0.7 4,705,200 - ovoA LU632_RS24695 0.88 -0.1 4,705,245 + ovoA LU632_RS24695 0.90 -2.6 4,705,245 + ovoA LU632_RS24695 0.90 -3.6 4,705,246 - ovoA LU632_RS24695 0.90 -1.0 4,705,248 - +0.6 4,705,248 - -1.9 4,705,248 - +0.9 4,705,566 + -1.5 4,705,566 + +1.1 4,705,583 - +1.6 4,705,622 + +0.9 4,705,623 - -0.7 4,705,654 - asnC LU632_RS24700 0.16 +1.8 4,705,802 + asnC LU632_RS24700 0.48 -2.6 4,705,878 + asnC LU632_RS24700 0.65 -1.0 4,705,878 + asnC LU632_RS24700 0.65 -0.1 4,705,879 - asnC LU632_RS24700 0.65 -1.8 4,706,031 - -0.6 4,706,031 - +0.8 4,706,080 + +0.6 4,706,132 + -1.7 4,706,132 + +0.2 4,706,176 - +0.3 4,706,231 - -1.1 4,706,313 + LU632_RS24705 0.15 -1.5 4,706,346 + LU632_RS24705 0.17 -0.5 4,706,347 - LU632_RS24705 0.17 +0.0 4,706,347 - LU632_RS24705 0.17 +1.2
Or see this region's nucleotide sequence