Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24235

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
4,620,976	+	rffA	LU632_RS24225	0.76	-2.1
4,620,976	+	rffA	LU632_RS24225	0.76	-2.0
4,621,005	+	rffA	LU632_RS24225	0.79	-2.4
4,621,005	+	rffA	LU632_RS24225	0.79	-4.0
4,621,007	+	rffA	LU632_RS24225	0.79	-1.5
4,621,008	-	rffA	LU632_RS24225	0.79	-0.8
4,621,102	-	rffA	LU632_RS24225	0.88	-1.6
4,621,194	+				-2.7
4,621,194	+				-0.8
4,621,194	+				-0.6
4,621,194	+				-1.4
4,621,195	-				+0.9
4,621,196	+				-2.5
4,621,197	-				-1.4
4,621,197	-				-0.7
4,621,197	-				+1.4
4,621,197	-				-0.3
4,621,230	+				-3.4
4,621,231	-				-2.4
4,621,242	+				-0.1
4,621,242	+				-1.7
4,621,242	+				-2.0
4,621,248	+				-2.1
4,621,254	+				-3.7
4,621,254	+				+1.4
4,621,254	+				-1.6
4,621,299	+				-1.5
4,621,388	+	rffC	LU632_RS24230	0.20	-2.6
4,621,388	+	rffC	LU632_RS24230	0.20	-0.3
4,621,389	-	rffC	LU632_RS24230	0.20	-2.4
4,621,389	-	rffC	LU632_RS24230	0.20	-0.6
4,621,389	-	rffC	LU632_RS24230	0.20	-0.7
4,621,393	+	rffC	LU632_RS24230	0.21	-0.2
4,621,393	+	rffC	LU632_RS24230	0.21	+2.1
4,621,393	+	rffC	LU632_RS24230	0.21	+1.2
4,621,393	+	rffC	LU632_RS24230	0.21	+0.9
4,621,393	+	rffC	LU632_RS24230	0.21	+0.9
4,621,394	-	rffC	LU632_RS24230	0.21	+0.4
4,621,600	-	rffC	LU632_RS24230	0.50	+0.2
4,621,812	-	rffC	LU632_RS24230	0.79	-1.7
4,621,934	+				-1.9
4,621,996	-				-0.7
4,622,148	+	wecC	LU632_RS24235	0.15	-1.4
4,622,271	+	wecC	LU632_RS24235	0.25	-0.7
4,622,397	+	wecC	LU632_RS24235	0.35	-1.2
4,622,455	-	wecC	LU632_RS24235	0.40	-2.1
4,622,497	+	wecC	LU632_RS24235	0.43	-0.5
4,622,599	-	wecC	LU632_RS24235	0.51	-1.6
4,622,750	+	wecC	LU632_RS24235	0.63	-0.8
4,623,094	-				+0.1
4,623,094	-				-0.9
4,623,094	-				-0.4
4,623,096	+				+0.9
4,623,096	+				-0.8
4,623,096	+				-0.7
4,623,096	+				+0.9
4,623,096	+				+0.3
4,623,217	-				+0.1
4,623,236	+				-1.1
4,623,237	-				+3.0
4,623,277	+				+0.0
4,623,285	-				-0.3
4,623,307	+				-1.2
4,623,308	-				-2.0
4,623,501	+	wecB	LU632_RS24240	0.25	-2.1
4,623,502	-	wecB	LU632_RS24240	0.26	-0.7
4,623,527	-	wecB	LU632_RS24240	0.28	-1.8
4,623,543	-	wecB	LU632_RS24240	0.29	-1.7
4,623,573	-	wecB	LU632_RS24240	0.32	-0.7
4,623,579	-	wecB	LU632_RS24240	0.32	-0.1
4,623,789	+	wecB	LU632_RS24240	0.51	-2.1
4,623,789	+	wecB	LU632_RS24240	0.51	+0.0
4,623,790	-	wecB	LU632_RS24240	0.51	-2.3
4,623,805	-	wecB	LU632_RS24240	0.52	-1.5
4,623,913	+	wecB	LU632_RS24240	0.62	+1.2
4,623,939	-	wecB	LU632_RS24240	0.64	-1.7
4,623,967	+	wecB	LU632_RS24240	0.67	-0.7
4,624,022	-	wecB	LU632_RS24240	0.72	+2.7
4,624,098	-	wecB	LU632_RS24240	0.78	-2.8
4,624,101	+	wecB	LU632_RS24240	0.79	-0.6
4,624,111	-	wecB	LU632_RS24240	0.79	-1.1
4,624,206	+	wecB	LU632_RS24240	0.88	-1.8