Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23925 and hemG are separated by 399 nucleotides hemG and trkH are separated by 19 nucleotides trkH and LU632_RS23940 are separated by 30 nucleotides LU632_RS23940 and pepQ overlap by 1 nucleotides
LU632_RS23925: LU632_RS23925 - 16S ribosomal RNA, at 4,560,685 to 4,562,226
_RS23925
LU632_RS23930: hemG - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 4,562,626 to 4,563,162
hemG
LU632_RS23935: trkH - Trk system potassium transporter TrkH, at 4,563,182 to 4,564,633
trkH
LU632_RS23940: LU632_RS23940 - IMPACT family protein, at 4,564,664 to 4,565,275
_RS23940
LU632_RS23945: pepQ - Xaa-Pro dipeptidase, at 4,565,275 to 4,566,606
pepQ
Position (kb) 4563
4564
4565 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4563.216 kb on - strand at 4563.391 kb on + strand, within trkH at 4563.391 kb on + strand, within trkH at 4563.395 kb on + strand, within trkH at 4563.396 kb on - strand, within trkH at 4563.396 kb on - strand, within trkH at 4563.396 kb on - strand, within trkH at 4563.396 kb on - strand, within trkH at 4563.423 kb on + strand, within trkH at 4563.423 kb on + strand, within trkH at 4563.424 kb on - strand, within trkH at 4563.424 kb on - strand, within trkH at 4563.424 kb on - strand, within trkH at 4563.468 kb on - strand, within trkH at 4563.659 kb on - strand, within trkH at 4563.670 kb on + strand, within trkH at 4563.670 kb on + strand, within trkH at 4563.736 kb on + strand, within trkH at 4563.787 kb on + strand, within trkH at 4563.787 kb on + strand, within trkH at 4563.808 kb on + strand, within trkH at 4563.876 kb on + strand, within trkH at 4564.068 kb on + strand, within trkH at 4564.068 kb on + strand, within trkH at 4564.068 kb on + strand, within trkH at 4564.069 kb on - strand, within trkH at 4564.069 kb on - strand, within trkH at 4564.117 kb on + strand, within trkH at 4564.126 kb on + strand, within trkH at 4564.127 kb on - strand, within trkH at 4564.187 kb on + strand, within trkH at 4564.269 kb on - strand, within trkH at 4564.269 kb on - strand, within trkH at 4564.420 kb on + strand, within trkH at 4564.618 kb on + strand at 4564.618 kb on + strand at 4564.618 kb on + strand at 4564.666 kb on - strand at 4564.720 kb on + strand at 4564.756 kb on + strand, within LU632_RS23940 at 4564.757 kb on - strand, within LU632_RS23940 at 4564.787 kb on - strand, within LU632_RS23940 at 4564.790 kb on + strand, within LU632_RS23940 at 4564.791 kb on - strand, within LU632_RS23940 at 4564.791 kb on - strand, within LU632_RS23940 at 4564.843 kb on - strand, within LU632_RS23940 at 4564.858 kb on + strand, within LU632_RS23940 at 4564.914 kb on - strand, within LU632_RS23940 at 4564.968 kb on + strand, within LU632_RS23940 at 4564.968 kb on + strand, within LU632_RS23940 at 4564.969 kb on - strand, within LU632_RS23940 at 4564.971 kb on + strand, within LU632_RS23940 at 4565.287 kb on + strand at 4565.287 kb on + strand at 4565.288 kb on - strand at 4565.444 kb on + strand, within pepQ at 4565.485 kb on + strand, within pepQ at 4565.554 kb on - strand, within pepQ at 4565.611 kb on - strand, within pepQ
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 4,563,216 - -0.3 4,563,391 + trkH LU632_RS23935 0.14 -2.1 4,563,391 + trkH LU632_RS23935 0.14 -3.3 4,563,395 + trkH LU632_RS23935 0.15 -1.1 4,563,396 - trkH LU632_RS23935 0.15 -0.6 4,563,396 - trkH LU632_RS23935 0.15 -0.1 4,563,396 - trkH LU632_RS23935 0.15 -0.1 4,563,396 - trkH LU632_RS23935 0.15 -0.8 4,563,423 + trkH LU632_RS23935 0.17 +1.7 4,563,423 + trkH LU632_RS23935 0.17 +0.9 4,563,424 - trkH LU632_RS23935 0.17 -0.9 4,563,424 - trkH LU632_RS23935 0.17 -2.0 4,563,424 - trkH LU632_RS23935 0.17 +0.5 4,563,468 - trkH LU632_RS23935 0.20 +0.5 4,563,659 - trkH LU632_RS23935 0.33 -1.3 4,563,670 + trkH LU632_RS23935 0.34 -0.1 4,563,670 + trkH LU632_RS23935 0.34 -1.8 4,563,736 + trkH LU632_RS23935 0.38 -1.9 4,563,787 + trkH LU632_RS23935 0.42 -0.6 4,563,787 + trkH LU632_RS23935 0.42 -2.8 4,563,808 + trkH LU632_RS23935 0.43 +0.1 4,563,876 + trkH LU632_RS23935 0.48 -0.7 4,564,068 + trkH LU632_RS23935 0.61 +1.1 4,564,068 + trkH LU632_RS23935 0.61 +1.4 4,564,068 + trkH LU632_RS23935 0.61 -0.3 4,564,069 - trkH LU632_RS23935 0.61 -0.6 4,564,069 - trkH LU632_RS23935 0.61 +1.0 4,564,117 + trkH LU632_RS23935 0.64 -1.7 4,564,126 + trkH LU632_RS23935 0.65 -3.3 4,564,127 - trkH LU632_RS23935 0.65 -0.3 4,564,187 + trkH LU632_RS23935 0.69 -0.1 4,564,269 - trkH LU632_RS23935 0.75 -0.1 4,564,269 - trkH LU632_RS23935 0.75 -0.5 4,564,420 + trkH LU632_RS23935 0.85 +1.5 4,564,618 + -1.8 4,564,618 + -0.1 4,564,618 + -2.3 4,564,666 - +1.2 4,564,720 + -1.3 4,564,756 + LU632_RS23940 0.15 -2.0 4,564,757 - LU632_RS23940 0.15 +0.3 4,564,787 - LU632_RS23940 0.20 -2.6 4,564,790 + LU632_RS23940 0.21 +0.2 4,564,791 - LU632_RS23940 0.21 +0.9 4,564,791 - LU632_RS23940 0.21 -0.8 4,564,843 - LU632_RS23940 0.29 -0.0 4,564,858 + LU632_RS23940 0.32 -1.8 4,564,914 - LU632_RS23940 0.41 -0.1 4,564,968 + LU632_RS23940 0.50 -1.3 4,564,968 + LU632_RS23940 0.50 +0.4 4,564,969 - LU632_RS23940 0.50 -0.3 4,564,971 + LU632_RS23940 0.50 +1.6 4,565,287 + +1.2 4,565,287 + -0.6 4,565,288 - +1.0 4,565,444 + pepQ LU632_RS23945 0.13 -1.0 4,565,485 + pepQ LU632_RS23945 0.16 +0.9 4,565,554 - pepQ LU632_RS23945 0.21 +1.5 4,565,611 - pepQ LU632_RS23945 0.25 -1.9
Or see this region's nucleotide sequence