Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22790 and LU632_RS22795 are separated by 29 nucleotides LU632_RS22795 and crp are separated by 310 nucleotides crp and LU632_RS22805 are separated by 57 nucleotides
LU632_RS22790: LU632_RS22790 - phosphoribulokinase, at 4,338,464 to 4,339,333
_RS22790
LU632_RS22795: LU632_RS22795 - OsmC family protein, at 4,339,363 to 4,339,770
_RS22795
LU632_RS22800: crp - cAMP-activated global transcriptional regulator CRP, at 4,340,081 to 4,340,713
crp
LU632_RS22805: LU632_RS22805 - YccS/YhfK family putative transporter, at 4,340,771 to 4,342,836
_RS22805
Position (kb) 4340
4341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4339.100 kb on - strand, within LU632_RS22790 at 4339.100 kb on - strand, within LU632_RS22790 at 4339.358 kb on + strand at 4339.429 kb on - strand, within LU632_RS22795 at 4339.433 kb on + strand, within LU632_RS22795 at 4339.433 kb on + strand, within LU632_RS22795 at 4339.433 kb on + strand, within LU632_RS22795 at 4339.434 kb on - strand, within LU632_RS22795 at 4339.434 kb on - strand, within LU632_RS22795 at 4339.702 kb on + strand, within LU632_RS22795 at 4339.756 kb on - strand at 4339.756 kb on - strand at 4339.818 kb on - strand at 4339.849 kb on + strand at 4339.850 kb on - strand at 4340.736 kb on + strand at 4340.737 kb on - strand at 4340.755 kb on + strand at 4340.762 kb on + strand at 4340.789 kb on + strand at 4340.789 kb on + strand at 4340.803 kb on + strand at 4340.803 kb on + strand at 4340.804 kb on - strand at 4340.807 kb on + strand at 4340.808 kb on - strand at 4340.915 kb on - strand at 4340.986 kb on + strand, within LU632_RS22805 at 4341.005 kb on + strand, within LU632_RS22805 at 4341.048 kb on + strand, within LU632_RS22805 at 4341.049 kb on - strand, within LU632_RS22805 at 4341.057 kb on + strand, within LU632_RS22805 at 4341.182 kb on + strand, within LU632_RS22805 at 4341.182 kb on + strand, within LU632_RS22805 at 4341.182 kb on + strand, within LU632_RS22805 at 4341.182 kb on + strand, within LU632_RS22805 at 4341.182 kb on + strand, within LU632_RS22805 at 4341.183 kb on - strand, within LU632_RS22805 at 4341.183 kb on - strand, within LU632_RS22805 at 4341.183 kb on - strand, within LU632_RS22805 at 4341.184 kb on + strand, within LU632_RS22805 at 4341.184 kb on + strand, within LU632_RS22805 at 4341.185 kb on - strand, within LU632_RS22805 at 4341.185 kb on - strand, within LU632_RS22805 at 4341.185 kb on - strand, within LU632_RS22805 at 4341.215 kb on - strand, within LU632_RS22805 at 4341.309 kb on - strand, within LU632_RS22805 at 4341.311 kb on - strand, within LU632_RS22805 at 4341.415 kb on + strand, within LU632_RS22805 at 4341.415 kb on + strand, within LU632_RS22805 at 4341.415 kb on + strand, within LU632_RS22805 at 4341.430 kb on + strand, within LU632_RS22805 at 4341.431 kb on - strand, within LU632_RS22805 at 4341.439 kb on + strand, within LU632_RS22805 at 4341.440 kb on - strand, within LU632_RS22805 at 4341.612 kb on + strand, within LU632_RS22805 at 4341.612 kb on + strand, within LU632_RS22805 at 4341.612 kb on + strand, within LU632_RS22805
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 4,339,100 - LU632_RS22790 0.73 +2.0 4,339,100 - LU632_RS22790 0.73 +3.1 4,339,358 + -1.5 4,339,429 - LU632_RS22795 0.16 -0.8 4,339,433 + LU632_RS22795 0.17 +2.1 4,339,433 + LU632_RS22795 0.17 +1.8 4,339,433 + LU632_RS22795 0.17 +1.8 4,339,434 - LU632_RS22795 0.17 -2.1 4,339,434 - LU632_RS22795 0.17 +0.8 4,339,702 + LU632_RS22795 0.83 +0.4 4,339,756 - +1.5 4,339,756 - -0.7 4,339,818 - +0.6 4,339,849 + +0.6 4,339,850 - +0.8 4,340,736 + -2.1 4,340,737 - +1.5 4,340,755 + -3.3 4,340,762 + -0.8 4,340,789 + +0.8 4,340,789 + +1.0 4,340,803 + -2.1 4,340,803 + -0.9 4,340,804 - +0.0 4,340,807 + +0.3 4,340,808 - +1.1 4,340,915 - -1.1 4,340,986 + LU632_RS22805 0.10 -2.2 4,341,005 + LU632_RS22805 0.11 -0.2 4,341,048 + LU632_RS22805 0.13 -0.8 4,341,049 - LU632_RS22805 0.13 -0.4 4,341,057 + LU632_RS22805 0.14 -0.7 4,341,182 + LU632_RS22805 0.20 +0.0 4,341,182 + LU632_RS22805 0.20 +0.1 4,341,182 + LU632_RS22805 0.20 -0.1 4,341,182 + LU632_RS22805 0.20 -1.4 4,341,182 + LU632_RS22805 0.20 +1.9 4,341,183 - LU632_RS22805 0.20 +0.8 4,341,183 - LU632_RS22805 0.20 +0.8 4,341,183 - LU632_RS22805 0.20 -2.9 4,341,184 + LU632_RS22805 0.20 +0.1 4,341,184 + LU632_RS22805 0.20 -2.2 4,341,185 - LU632_RS22805 0.20 -0.7 4,341,185 - LU632_RS22805 0.20 -2.4 4,341,185 - LU632_RS22805 0.20 -1.6 4,341,215 - LU632_RS22805 0.21 -0.8 4,341,309 - LU632_RS22805 0.26 -0.2 4,341,311 - LU632_RS22805 0.26 +0.2 4,341,415 + LU632_RS22805 0.31 -0.2 4,341,415 + LU632_RS22805 0.31 -0.8 4,341,415 + LU632_RS22805 0.31 +0.4 4,341,430 + LU632_RS22805 0.32 +1.3 4,341,431 - LU632_RS22805 0.32 -1.1 4,341,439 + LU632_RS22805 0.32 +0.8 4,341,440 - LU632_RS22805 0.32 +5.3 4,341,612 + LU632_RS22805 0.41 +1.2 4,341,612 + LU632_RS22805 0.41 +0.1 4,341,612 + LU632_RS22805 0.41 -2.6
Or see this region's nucleotide sequence