Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22380 and LU632_RS22385 are separated by 31 nucleotides LU632_RS22385 and LU632_RS22390 are separated by 128 nucleotides LU632_RS22390 and LU632_RS22395 are separated by 24 nucleotides
LU632_RS22380: LU632_RS22380 - bile acid:sodium symporter family protein, at 4,275,643 to 4,276,560
_RS22380
LU632_RS22385: LU632_RS22385 - Na/Pi cotransporter family protein, at 4,276,592 to 4,278,217
_RS22385
LU632_RS22390: LU632_RS22390 - TOBE domain-containing protein, at 4,278,346 to 4,278,721
_RS22390
LU632_RS22395: LU632_RS22395 - alkaline phosphatase family protein, at 4,278,746 to 4,279,365
_RS22395
Position (kb) 4276
4277
4278
4279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4275.658 kb on - strand at 4275.704 kb on - strand at 4275.748 kb on + strand, within LU632_RS22380 at 4275.749 kb on - strand, within LU632_RS22380 at 4275.766 kb on - strand, within LU632_RS22380 at 4275.766 kb on - strand, within LU632_RS22380 at 4275.766 kb on - strand, within LU632_RS22380 at 4275.860 kb on + strand, within LU632_RS22380 at 4275.891 kb on + strand, within LU632_RS22380 at 4275.904 kb on - strand, within LU632_RS22380 at 4275.904 kb on - strand, within LU632_RS22380 at 4275.969 kb on + strand, within LU632_RS22380 at 4275.970 kb on - strand, within LU632_RS22380 at 4276.065 kb on + strand, within LU632_RS22380 at 4276.065 kb on + strand, within LU632_RS22380 at 4276.066 kb on - strand, within LU632_RS22380 at 4276.066 kb on - strand, within LU632_RS22380 at 4276.066 kb on - strand, within LU632_RS22380 at 4276.066 kb on - strand, within LU632_RS22380 at 4276.086 kb on + strand, within LU632_RS22380 at 4276.101 kb on - strand, within LU632_RS22380 at 4276.101 kb on - strand, within LU632_RS22380 at 4276.101 kb on - strand, within LU632_RS22380 at 4276.101 kb on - strand, within LU632_RS22380 at 4276.101 kb on - strand, within LU632_RS22380 at 4276.119 kb on + strand, within LU632_RS22380 at 4276.119 kb on + strand, within LU632_RS22380 at 4276.242 kb on + strand, within LU632_RS22380 at 4276.750 kb on + strand at 4276.751 kb on - strand at 4276.751 kb on - strand at 4276.751 kb on - strand at 4276.751 kb on - strand at 4276.819 kb on + strand, within LU632_RS22385 at 4276.820 kb on - strand, within LU632_RS22385 at 4276.898 kb on - strand, within LU632_RS22385 at 4276.970 kb on - strand, within LU632_RS22385 at 4277.068 kb on - strand, within LU632_RS22385 at 4277.068 kb on - strand, within LU632_RS22385 at 4277.085 kb on + strand, within LU632_RS22385 at 4277.086 kb on - strand, within LU632_RS22385 at 4277.194 kb on + strand, within LU632_RS22385 at 4277.195 kb on - strand, within LU632_RS22385 at 4277.198 kb on + strand, within LU632_RS22385 at 4277.199 kb on - strand, within LU632_RS22385 at 4277.199 kb on - strand, within LU632_RS22385 at 4277.373 kb on + strand, within LU632_RS22385 at 4277.373 kb on + strand, within LU632_RS22385 at 4277.373 kb on + strand, within LU632_RS22385 at 4277.391 kb on - strand, within LU632_RS22385 at 4277.422 kb on + strand, within LU632_RS22385 at 4277.623 kb on + strand, within LU632_RS22385 at 4277.662 kb on - strand, within LU632_RS22385 at 4277.884 kb on + strand, within LU632_RS22385 at 4278.025 kb on + strand, within LU632_RS22385 at 4278.025 kb on + strand, within LU632_RS22385 at 4278.026 kb on - strand, within LU632_RS22385 at 4278.026 kb on - strand, within LU632_RS22385 at 4278.028 kb on + strand, within LU632_RS22385 at 4278.028 kb on + strand, within LU632_RS22385 at 4278.028 kb on + strand, within LU632_RS22385 at 4278.029 kb on - strand, within LU632_RS22385 at 4278.029 kb on - strand, within LU632_RS22385 at 4278.034 kb on + strand, within LU632_RS22385 at 4278.034 kb on + strand, within LU632_RS22385 at 4278.035 kb on - strand, within LU632_RS22385 at 4278.203 kb on + strand at 4278.250 kb on + strand at 4278.372 kb on + strand at 4278.372 kb on + strand at 4278.376 kb on + strand at 4278.675 kb on + strand, within LU632_RS22390 at 4278.676 kb on - strand, within LU632_RS22390 at 4278.834 kb on - strand, within LU632_RS22395 at 4278.846 kb on + strand, within LU632_RS22395 at 4278.846 kb on + strand, within LU632_RS22395 at 4278.847 kb on - strand, within LU632_RS22395 at 4278.847 kb on - strand, within LU632_RS22395 at 4278.847 kb on - strand, within LU632_RS22395 at 4278.901 kb on + strand, within LU632_RS22395 at 4278.901 kb on + strand, within LU632_RS22395 at 4279.074 kb on + strand, within LU632_RS22395 at 4279.076 kb on + strand, within LU632_RS22395 at 4279.097 kb on + strand, within LU632_RS22395 at 4279.184 kb on + strand, within LU632_RS22395 at 4279.184 kb on + strand, within LU632_RS22395 at 4279.184 kb on + strand, within LU632_RS22395 at 4279.184 kb on + strand, within LU632_RS22395 at 4279.184 kb on + strand, within LU632_RS22395 at 4279.184 kb on + strand, within LU632_RS22395 at 4279.185 kb on - strand, within LU632_RS22395 at 4279.185 kb on - strand, within LU632_RS22395 at 4279.185 kb on - strand, within LU632_RS22395 at 4279.213 kb on + strand, within LU632_RS22395 at 4279.213 kb on + strand, within LU632_RS22395 at 4279.214 kb on - strand, within LU632_RS22395 at 4279.214 kb on - strand, within LU632_RS22395 at 4279.214 kb on - strand, within LU632_RS22395
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 4,275,658 - -1.0 4,275,704 - -2.1 4,275,748 + LU632_RS22380 0.11 -2.8 4,275,749 - LU632_RS22380 0.12 -0.3 4,275,766 - LU632_RS22380 0.13 +0.7 4,275,766 - LU632_RS22380 0.13 -2.6 4,275,766 - LU632_RS22380 0.13 +0.5 4,275,860 + LU632_RS22380 0.24 +0.3 4,275,891 + LU632_RS22380 0.27 +1.1 4,275,904 - LU632_RS22380 0.28 +0.8 4,275,904 - LU632_RS22380 0.28 -0.8 4,275,969 + LU632_RS22380 0.36 +0.1 4,275,970 - LU632_RS22380 0.36 -1.5 4,276,065 + LU632_RS22380 0.46 -1.3 4,276,065 + LU632_RS22380 0.46 +2.9 4,276,066 - LU632_RS22380 0.46 -0.6 4,276,066 - LU632_RS22380 0.46 -0.6 4,276,066 - LU632_RS22380 0.46 -0.7 4,276,066 - LU632_RS22380 0.46 +0.9 4,276,086 + LU632_RS22380 0.48 +1.2 4,276,101 - LU632_RS22380 0.50 +2.1 4,276,101 - LU632_RS22380 0.50 +0.0 4,276,101 - LU632_RS22380 0.50 +0.0 4,276,101 - LU632_RS22380 0.50 -0.5 4,276,101 - LU632_RS22380 0.50 -0.2 4,276,119 + LU632_RS22380 0.52 -0.4 4,276,119 + LU632_RS22380 0.52 -1.4 4,276,242 + LU632_RS22380 0.65 +0.2 4,276,750 + -0.3 4,276,751 - -1.1 4,276,751 - -2.0 4,276,751 - +0.3 4,276,751 - +0.2 4,276,819 + LU632_RS22385 0.14 -1.8 4,276,820 - LU632_RS22385 0.14 -0.5 4,276,898 - LU632_RS22385 0.19 -0.4 4,276,970 - LU632_RS22385 0.23 -0.2 4,277,068 - LU632_RS22385 0.29 -0.1 4,277,068 - LU632_RS22385 0.29 -0.3 4,277,085 + LU632_RS22385 0.30 -0.8 4,277,086 - LU632_RS22385 0.30 -1.3 4,277,194 + LU632_RS22385 0.37 -0.9 4,277,195 - LU632_RS22385 0.37 -0.1 4,277,198 + LU632_RS22385 0.37 -2.4 4,277,199 - LU632_RS22385 0.37 +0.3 4,277,199 - LU632_RS22385 0.37 +0.1 4,277,373 + LU632_RS22385 0.48 -1.6 4,277,373 + LU632_RS22385 0.48 +0.2 4,277,373 + LU632_RS22385 0.48 +1.6 4,277,391 - LU632_RS22385 0.49 -0.7 4,277,422 + LU632_RS22385 0.51 +0.9 4,277,623 + LU632_RS22385 0.63 +0.8 4,277,662 - LU632_RS22385 0.66 -0.3 4,277,884 + LU632_RS22385 0.79 -0.2 4,278,025 + LU632_RS22385 0.88 +0.8 4,278,025 + LU632_RS22385 0.88 -1.2 4,278,026 - LU632_RS22385 0.88 -3.0 4,278,026 - LU632_RS22385 0.88 -2.0 4,278,028 + LU632_RS22385 0.88 +0.6 4,278,028 + LU632_RS22385 0.88 -0.0 4,278,028 + LU632_RS22385 0.88 +0.8 4,278,029 - LU632_RS22385 0.88 -0.7 4,278,029 - LU632_RS22385 0.88 -1.5 4,278,034 + LU632_RS22385 0.89 +0.8 4,278,034 + LU632_RS22385 0.89 +0.1 4,278,035 - LU632_RS22385 0.89 -0.7 4,278,203 + +2.7 4,278,250 + -0.4 4,278,372 + +1.1 4,278,372 + +0.8 4,278,376 + -0.8 4,278,675 + LU632_RS22390 0.88 +0.0 4,278,676 - LU632_RS22390 0.88 +1.0 4,278,834 - LU632_RS22395 0.14 -1.2 4,278,846 + LU632_RS22395 0.16 -2.6 4,278,846 + LU632_RS22395 0.16 +1.6 4,278,847 - LU632_RS22395 0.16 -1.0 4,278,847 - LU632_RS22395 0.16 +0.8 4,278,847 - LU632_RS22395 0.16 +0.8 4,278,901 + LU632_RS22395 0.25 +0.5 4,278,901 + LU632_RS22395 0.25 +1.1 4,279,074 + LU632_RS22395 0.53 -1.6 4,279,076 + LU632_RS22395 0.53 -0.3 4,279,097 + LU632_RS22395 0.57 -1.6 4,279,184 + LU632_RS22395 0.71 +0.8 4,279,184 + LU632_RS22395 0.71 -1.0 4,279,184 + LU632_RS22395 0.71 +0.4 4,279,184 + LU632_RS22395 0.71 +1.7 4,279,184 + LU632_RS22395 0.71 +0.4 4,279,184 + LU632_RS22395 0.71 +1.4 4,279,185 - LU632_RS22395 0.71 +0.8 4,279,185 - LU632_RS22395 0.71 -2.8 4,279,185 - LU632_RS22395 0.71 -0.2 4,279,213 + LU632_RS22395 0.75 +2.1 4,279,213 + LU632_RS22395 0.75 +3.7 4,279,214 - LU632_RS22395 0.75 +0.0 4,279,214 - LU632_RS22395 0.75 +0.4 4,279,214 - LU632_RS22395 0.75 +4.2
Or see this region's nucleotide sequence