Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21960

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS21955 and waaA are separated by 102 nucleotideswaaA and LU632_RS21965 are separated by 0 nucleotidesLU632_RS21965 and coaD overlap by 4 nucleotides LU632_RS21955: LU632_RS21955 - glycosyltransferase family 4 protein, at 4,194,988 to 4,196,121 _RS21955 LU632_RS21960: waaA - lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase, at 4,196,224 to 4,197,498 waaA LU632_RS21965: LU632_RS21965 - glycosyltransferase family 2 protein, at 4,197,499 to 4,198,284 _RS21965 LU632_RS21970: coaD - pantetheine-phosphate adenylyltransferase, at 4,198,281 to 4,198,757 coaD Position (kb) 4196 4197 4198Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4195.264 kb on - strand, within LU632_RS21955at 4195.615 kb on + strand, within LU632_RS21955at 4195.616 kb on - strand, within LU632_RS21955at 4196.096 kb on - strandat 4196.105 kb on + strandat 4196.106 kb on - strandat 4196.126 kb on + strandat 4196.126 kb on + strandat 4196.127 kb on - strandat 4196.145 kb on + strandat 4196.152 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
remove
4,195,264 - LU632_RS21955 0.24 -1.8
4,195,615 + LU632_RS21955 0.55 -3.2
4,195,616 - LU632_RS21955 0.55 -2.4
4,196,096 - -1.2
4,196,105 + +2.5
4,196,106 - +0.3
4,196,126 + +0.4
4,196,126 + -0.6
4,196,127 - -0.8
4,196,145 + +1.8
4,196,152 + +0.9

Or see this region's nucleotide sequence