Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21275

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlptC and lptA overlap by 29 nucleotideslptA and lptB are separated by 10 nucleotideslptB and rpoN are separated by 46 nucleotides LU632_RS21265: lptC - LPS export ABC transporter periplasmic protein LptC, at 4,060,271 to 4,060,846 lptC LU632_RS21270: lptA - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 4,060,818 to 4,061,366 lptA LU632_RS21275: lptB - LPS export ABC transporter ATP-binding protein, at 4,061,377 to 4,062,102 lptB LU632_RS21280: rpoN - RNA polymerase factor sigma-54, at 4,062,149 to 4,063,582 rpoN Position (kb) 4061 4062 4063Strain fitness (log2 ratio) -2 -1 0 1at 4061.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
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4,061,364 + -1.8

Or see this region's nucleotide sequence