Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20425

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
3,883,577	+				-1.3
3,883,578	-				-0.8
3,883,786	+				+0.7
3,883,787	-				-2.1
3,883,819	-				-1.5
3,883,897	-		LU632_RS20410	0.50	-0.8
3,883,943	+		LU632_RS20410	0.77	-0.5
3,883,943	+		LU632_RS20410	0.77	+1.2
3,883,943	+		LU632_RS20410	0.77	-0.1
3,883,943	+		LU632_RS20410	0.77	-0.7
3,883,944	-		LU632_RS20410	0.78	-0.3
3,883,944	-		LU632_RS20410	0.78	+0.7
3,883,944	-		LU632_RS20410	0.78	-2.7
3,883,948	-		LU632_RS20410	0.80	+0.7
3,883,983	-				+0.3
3,883,987	+				-1.1
3,883,987	+				+1.2
3,883,987	+				+1.4
3,884,100	+				-1.8
3,884,128	+				-0.4
3,884,159	-				+0.4
3,884,211	+				+1.0
3,884,231	+				-0.7
3,884,233	+				+1.9
3,884,233	+				+0.7
3,884,234	-				-0.3
3,884,234	-				+1.4
3,884,397	-				+1.0
3,884,408	+		LU632_RS20420	0.18	-0.3
3,884,409	-		LU632_RS20420	0.19	+0.7
3,884,409	-		LU632_RS20420	0.19	+0.0
3,884,413	-		LU632_RS20420	0.24	-0.5
3,884,413	-		LU632_RS20420	0.24	-1.6
3,884,483	+				-0.3
3,884,495	+				-0.9
3,884,496	-				+0.1
3,885,337	+				-0.3
3,885,358	-				+0.6