Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20150

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
3,836,824	+	cueO	LU632_RS20140	0.81	-0.9
3,836,825	-	cueO	LU632_RS20140	0.81	-2.3
3,836,825	-	cueO	LU632_RS20140	0.81	-0.6
3,836,916	+	cueO	LU632_RS20140	0.87	+0.4
3,836,916	+	cueO	LU632_RS20140	0.87	-0.1
3,836,917	-	cueO	LU632_RS20140	0.87	-1.2
3,836,918	+	cueO	LU632_RS20140	0.87	+0.3
3,836,919	-	cueO	LU632_RS20140	0.87	-2.3
3,836,929	-	cueO	LU632_RS20140	0.88	-0.9
3,836,929	-	cueO	LU632_RS20140	0.88	+3.0
3,836,929	-	cueO	LU632_RS20140	0.88	-0.2
3,836,929	-	cueO	LU632_RS20140	0.88	-1.2
3,837,007	+				+0.7
3,837,221	+				-0.3
3,837,221	+				+0.8
3,837,293	+				+0.7
3,837,312	-				+2.1
3,837,430	-		LU632_RS20145	0.34	+1.0
3,837,524	+		LU632_RS20145	0.61	-2.5
3,837,525	-		LU632_RS20145	0.61	+3.2
3,837,529	-		LU632_RS20145	0.62	+0.3
3,837,529	-		LU632_RS20145	0.62	-0.2
3,837,537	+		LU632_RS20145	0.65	-1.3
3,837,567	+		LU632_RS20145	0.73	-0.9
3,837,567	+		LU632_RS20145	0.73	+0.7
3,837,567	+		LU632_RS20145	0.73	+0.1
3,837,567	+		LU632_RS20145	0.73	-0.1
3,837,568	-		LU632_RS20145	0.74	+0.4
3,837,568	-		LU632_RS20145	0.74	-0.3
3,837,568	-		LU632_RS20145	0.74	+0.8
3,837,658	-				+0.7
3,837,715	+				-1.2
3,837,715	+				+0.3
3,837,716	-				+0.6
3,837,719	+				+0.2
3,837,719	+				+2.0
3,837,720	-				-3.3
3,837,790	+				-0.3
3,837,839	+				-1.9
3,837,845	-				-0.3
3,837,845	-				-0.5
3,837,934	-	speE	LU632_RS20150	0.19	-2.7
3,837,955	+	speE	LU632_RS20150	0.22	-1.6
3,838,038	+	speE	LU632_RS20150	0.31	-0.2
3,838,038	+	speE	LU632_RS20150	0.31	-1.0
3,838,038	+	speE	LU632_RS20150	0.31	+0.2
3,838,038	+	speE	LU632_RS20150	0.31	+0.3
3,838,038	+	speE	LU632_RS20150	0.31	-0.1
3,838,038	+	speE	LU632_RS20150	0.31	-0.9
3,838,038	+	speE	LU632_RS20150	0.31	-2.5
3,838,038	+	speE	LU632_RS20150	0.31	+0.8
3,838,039	-	speE	LU632_RS20150	0.31	-1.9
3,838,039	-	speE	LU632_RS20150	0.31	+0.7
3,838,039	-	speE	LU632_RS20150	0.31	+1.2
3,838,039	-	speE	LU632_RS20150	0.31	+0.1
3,838,127	-	speE	LU632_RS20150	0.42	-0.6
3,838,219	-	speE	LU632_RS20150	0.52	-0.9
3,838,403	-	speE	LU632_RS20150	0.74	-1.8
3,838,444	+	speE	LU632_RS20150	0.79	+3.3
3,838,444	+	speE	LU632_RS20150	0.79	+1.3
3,838,445	-	speE	LU632_RS20150	0.79	-1.5
3,838,445	-	speE	LU632_RS20150	0.79	-0.4
3,838,502	+	speE	LU632_RS20150	0.85	-0.9
3,838,503	-	speE	LU632_RS20150	0.86	+0.7
3,838,507	-	speE	LU632_RS20150	0.86	-1.2
3,838,556	-				+0.2
3,838,558	+				-3.1
3,838,558	+				+0.0
3,838,559	-				-3.0
3,838,559	-				+2.4
3,838,559	-				+0.6
3,838,608	-				-0.5
3,838,670	-				+0.7
3,838,713	+				+1.0
3,838,714	-				+0.0
3,838,756	-	speD	LU632_RS20155	0.13	+1.4
3,838,757	+	speD	LU632_RS20155	0.13	+2.6
3,838,764	+	speD	LU632_RS20155	0.14	+1.4
3,838,764	+	speD	LU632_RS20155	0.14	-0.3
3,838,765	-	speD	LU632_RS20155	0.14	-1.9
3,838,765	-	speD	LU632_RS20155	0.14	+5.1
3,838,779	+	speD	LU632_RS20155	0.16	-0.1
3,838,780	-	speD	LU632_RS20155	0.16	+0.2
3,838,780	-	speD	LU632_RS20155	0.16	-1.3
3,838,843	+	speD	LU632_RS20155	0.23	-1.3
3,838,844	-	speD	LU632_RS20155	0.24	-2.1
3,838,982	+	speD	LU632_RS20155	0.41	-1.9
3,838,983	-	speD	LU632_RS20155	0.41	+0.3
3,838,992	-	speD	LU632_RS20155	0.42	+0.3
3,839,063	-	speD	LU632_RS20155	0.51	+0.3
3,839,063	-	speD	LU632_RS20155	0.51	-1.3
3,839,103	+	speD	LU632_RS20155	0.56	-0.6
3,839,104	-	speD	LU632_RS20155	0.56	-0.4
3,839,129	+	speD	LU632_RS20155	0.59	-2.8
3,839,130	-	speD	LU632_RS20155	0.59	-0.4
3,839,130	-	speD	LU632_RS20155	0.59	-1.3
3,839,190	+	speD	LU632_RS20155	0.66	+1.7
3,839,190	+	speD	LU632_RS20155	0.66	-0.3
3,839,190	+	speD	LU632_RS20155	0.66	-0.4
3,839,190	+	speD	LU632_RS20155	0.66	+1.7
3,839,190	+	speD	LU632_RS20155	0.66	-0.1
3,839,191	-	speD	LU632_RS20155	0.66	-2.0
3,839,191	-	speD	LU632_RS20155	0.66	+2.1
3,839,193	-	speD	LU632_RS20155	0.67	-1.1
3,839,250	+	speD	LU632_RS20155	0.74	-0.9
3,839,251	-	speD	LU632_RS20155	0.74	-0.2
3,839,331	+	speD	LU632_RS20155	0.84	-0.2
3,839,332	-	speD	LU632_RS20155	0.84	-1.8
3,839,359	+	speD	LU632_RS20155	0.87	+0.1
3,839,359	+	speD	LU632_RS20155	0.87	-2.3
3,839,360	-	speD	LU632_RS20155	0.87	-1.6
3,839,360	-	speD	LU632_RS20155	0.87	-0.9
3,839,392	+				+2.3
3,839,392	+				-0.3
3,839,479	-		LU632_RS20160	0.11	-0.7
3,839,588	+		LU632_RS20160	0.24	-0.4
3,839,589	-		LU632_RS20160	0.25	+0.1
3,839,589	-		LU632_RS20160	0.25	+2.4
3,839,589	-		LU632_RS20160	0.25	+1.4