Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS19740 and LU632_RS19745 are separated by 148 nucleotides LU632_RS19745 and LU632_RS19750 are separated by 76 nucleotides LU632_RS19750 and LU632_RS19755 are separated by 131 nucleotides LU632_RS19755 and LU632_RS19760 are separated by 8 nucleotides
LU632_RS19740: LU632_RS19740 - LysE family translocator, at 3,750,705 to 3,751,204
_RS19740
LU632_RS19745: LU632_RS19745 - glutathione S-transferase N-terminal domain-containing protein, at 3,751,353 to 3,751,715
_RS19745
LU632_RS19750: LU632_RS19750 - PhzF family phenazine biosynthesis protein, at 3,751,792 to 3,752,297
_RS19750
LU632_RS19755: LU632_RS19755 - hypothetical protein, at 3,752,429 to 3,752,607
_RS19755
LU632_RS19760: LU632_RS19760 - IS91 family transposase, at 3,752,616 to 3,753,815
_RS19760
Position (kb) 3751
3752
3753 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3750.792 kb on - strand, within LU632_RS19740 at 3750.792 kb on - strand, within LU632_RS19740 at 3750.794 kb on - strand, within LU632_RS19740 at 3750.817 kb on + strand, within LU632_RS19740 at 3750.857 kb on - strand, within LU632_RS19740 at 3750.859 kb on - strand, within LU632_RS19740 at 3750.859 kb on - strand, within LU632_RS19740 at 3750.881 kb on + strand, within LU632_RS19740 at 3750.881 kb on + strand, within LU632_RS19740 at 3751.001 kb on + strand, within LU632_RS19740 at 3751.002 kb on - strand, within LU632_RS19740 at 3751.005 kb on + strand, within LU632_RS19740 at 3751.005 kb on + strand, within LU632_RS19740 at 3751.009 kb on + strand, within LU632_RS19740 at 3751.009 kb on + strand, within LU632_RS19740 at 3751.153 kb on + strand, within LU632_RS19740 at 3751.196 kb on - strand at 3751.215 kb on + strand at 3751.215 kb on + strand at 3751.215 kb on + strand at 3751.216 kb on - strand at 3751.216 kb on - strand at 3751.216 kb on - strand at 3751.218 kb on + strand at 3751.219 kb on - strand at 3751.290 kb on + strand at 3751.291 kb on - strand at 3751.502 kb on - strand, within LU632_RS19745 at 3751.528 kb on - strand, within LU632_RS19745 at 3751.583 kb on + strand, within LU632_RS19745 at 3751.637 kb on - strand, within LU632_RS19745 at 3751.637 kb on - strand, within LU632_RS19745 at 3751.640 kb on + strand, within LU632_RS19745 at 3751.641 kb on - strand, within LU632_RS19745 at 3751.705 kb on - strand at 3751.716 kb on - strand at 3751.750 kb on + strand at 3751.751 kb on - strand at 3751.754 kb on + strand at 3751.754 kb on + strand at 3751.754 kb on + strand at 3751.755 kb on - strand at 3751.802 kb on + strand at 3751.821 kb on - strand at 3751.886 kb on + strand, within LU632_RS19750 at 3751.887 kb on - strand, within LU632_RS19750 at 3752.183 kb on + strand, within LU632_RS19750 at 3752.184 kb on - strand, within LU632_RS19750
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 3,750,792 - LU632_RS19740 0.17 -3.9 3,750,792 - LU632_RS19740 0.17 -0.9 3,750,794 - LU632_RS19740 0.18 +0.9 3,750,817 + LU632_RS19740 0.22 +0.3 3,750,857 - LU632_RS19740 0.30 +0.2 3,750,859 - LU632_RS19740 0.31 +0.2 3,750,859 - LU632_RS19740 0.31 +0.4 3,750,881 + LU632_RS19740 0.35 -0.9 3,750,881 + LU632_RS19740 0.35 -1.0 3,751,001 + LU632_RS19740 0.59 -1.9 3,751,002 - LU632_RS19740 0.59 +1.4 3,751,005 + LU632_RS19740 0.60 -0.7 3,751,005 + LU632_RS19740 0.60 +1.5 3,751,009 + LU632_RS19740 0.61 +1.0 3,751,009 + LU632_RS19740 0.61 -1.1 3,751,153 + LU632_RS19740 0.90 +1.6 3,751,196 - -0.4 3,751,215 + +0.1 3,751,215 + +0.9 3,751,215 + -0.9 3,751,216 - -1.2 3,751,216 - +0.6 3,751,216 - +0.2 3,751,218 + +2.6 3,751,219 - -0.3 3,751,290 + -0.5 3,751,291 - -2.7 3,751,502 - LU632_RS19745 0.41 +0.6 3,751,528 - LU632_RS19745 0.48 -2.7 3,751,583 + LU632_RS19745 0.63 -3.6 3,751,637 - LU632_RS19745 0.78 +0.7 3,751,637 - LU632_RS19745 0.78 -2.4 3,751,640 + LU632_RS19745 0.79 -0.8 3,751,641 - LU632_RS19745 0.79 -0.9 3,751,705 - -1.5 3,751,716 - +0.8 3,751,750 + +1.2 3,751,751 - -0.7 3,751,754 + -0.8 3,751,754 + -1.8 3,751,754 + +0.1 3,751,755 - -0.1 3,751,802 + -0.4 3,751,821 - -0.4 3,751,886 + LU632_RS19750 0.19 +0.8 3,751,887 - LU632_RS19750 0.19 +0.8 3,752,183 + LU632_RS19750 0.77 -1.8 3,752,184 - LU632_RS19750 0.77 -0.5
Or see this region's nucleotide sequence