Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19635

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
3,726,323	+	metF	LU632_RS19630	0.27	-0.3
3,726,477	-	metF	LU632_RS19630	0.44	+1.2
3,726,584	-	metF	LU632_RS19630	0.56	-0.1
3,726,635	+	metF	LU632_RS19630	0.62	-2.9
3,726,635	+	metF	LU632_RS19630	0.62	+0.5
3,726,636	-	metF	LU632_RS19630	0.62	+0.8
3,726,788	+	metF	LU632_RS19630	0.79	-0.3
3,726,796	+	metF	LU632_RS19630	0.80	+0.4
3,726,796	+	metF	LU632_RS19630	0.80	+0.5
3,726,797	-	metF	LU632_RS19630	0.80	-1.9
3,726,816	-	metF	LU632_RS19630	0.82	-0.5
3,726,905	+				-1.1
3,726,906	-				-0.5
3,726,999	-				-1.4
3,727,027	-				+0.3
3,727,106	+				-2.2
3,727,107	-				-2.5
3,727,212	-				-0.2
3,727,214	+				-0.4
3,727,215	-				+0.9
3,727,409	-				+0.1
3,727,564	+		LU632_RS19635	0.15	+2.7
3,727,734	+		LU632_RS19635	0.22	-0.1
3,727,825	+		LU632_RS19635	0.26	-0.3
3,727,825	+		LU632_RS19635	0.26	+0.7
3,727,825	+		LU632_RS19635	0.26	+0.9
3,727,825	+		LU632_RS19635	0.26	+1.1
3,727,826	-		LU632_RS19635	0.26	+0.2
3,727,878	-		LU632_RS19635	0.28	-0.3
3,727,931	-		LU632_RS19635	0.31	+1.2
3,727,949	-		LU632_RS19635	0.31	-0.2
3,728,101	+		LU632_RS19635	0.38	+0.2
3,728,102	-		LU632_RS19635	0.38	-0.1
3,728,102	-		LU632_RS19635	0.38	-0.4
3,728,114	+		LU632_RS19635	0.38	-0.1
3,728,144	+		LU632_RS19635	0.39	+3.2
3,728,331	+		LU632_RS19635	0.47	+0.4
3,728,354	+		LU632_RS19635	0.48	+0.7
3,728,528	+		LU632_RS19635	0.55	-0.2
3,728,528	+		LU632_RS19635	0.55	-0.3
3,728,530	+		LU632_RS19635	0.55	-0.1
3,728,530	+		LU632_RS19635	0.55	-0.2
3,728,530	+		LU632_RS19635	0.55	+2.5
3,728,531	-		LU632_RS19635	0.55	+0.7
3,728,735	+		LU632_RS19635	0.64	+1.0
3,728,736	-		LU632_RS19635	0.64	+0.0
3,728,755	+		LU632_RS19635	0.64	+1.5
3,728,760	-		LU632_RS19635	0.65	+2.8
3,728,760	-		LU632_RS19635	0.65	+0.7
3,728,760	-		LU632_RS19635	0.65	+1.0
3,728,760	-		LU632_RS19635	0.65	+3.2
3,728,866	-		LU632_RS19635	0.69	+0.5
3,728,866	-		LU632_RS19635	0.69	-1.3
3,728,866	-		LU632_RS19635	0.69	-0.9
3,728,868	+		LU632_RS19635	0.69	+0.9
3,729,084	+		LU632_RS19635	0.78	+0.4
3,729,111	-		LU632_RS19635	0.79	-0.5
3,729,111	-		LU632_RS19635	0.79	+0.3
3,729,228	+		LU632_RS19635	0.84	-1.7
3,729,229	-		LU632_RS19635	0.84	-2.5
3,729,229	-		LU632_RS19635	0.84	-0.2
3,729,256	+		LU632_RS19635	0.85	-0.9
3,729,323	+		LU632_RS19635	0.88	-0.2
3,729,323	+		LU632_RS19635	0.88	-0.2
3,729,323	+		LU632_RS19635	0.88	+1.5
3,729,327	-		LU632_RS19635	0.88	+0.4
3,729,332	+		LU632_RS19635	0.88	+0.5
3,729,333	-		LU632_RS19635	0.88	+2.2
3,729,354	+		LU632_RS19635	0.89	+0.5
3,729,355	-		LU632_RS19635	0.89	+0.3
3,729,355	-		LU632_RS19635	0.89	+0.3
3,729,451	-				+0.2
3,729,508	+				+1.2
3,729,509	-				-1.6
3,729,575	+				-3.0
3,729,621	+				-0.3
3,729,697	+				-2.2
3,729,698	-				-0.9
3,729,782	-	metB	LU632_RS19640	0.14	-0.3
3,729,817	+	metB	LU632_RS19640	0.17	-0.1
3,729,912	-	metB	LU632_RS19640	0.25	-1.3
3,729,955	-	metB	LU632_RS19640	0.29	+4.4
3,729,955	-	metB	LU632_RS19640	0.29	-2.3
3,729,955	-	metB	LU632_RS19640	0.29	+0.1
3,729,988	-	metB	LU632_RS19640	0.32	+0.9
3,730,042	+	metB	LU632_RS19640	0.36	-0.5
3,730,059	-	metB	LU632_RS19640	0.38	+0.7
3,730,065	+	metB	LU632_RS19640	0.38	-0.8
3,730,066	-	metB	LU632_RS19640	0.38	+1.4
3,730,274	+	metB	LU632_RS19640	0.56	+0.7
3,730,301	-	metB	LU632_RS19640	0.59	-0.2
3,730,301	-	metB	LU632_RS19640	0.59	-0.0
3,730,478	+	metB	LU632_RS19640	0.74	-1.2