Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16150

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
3,052,167	+		LU632_RS16140	0.82	-1.2
3,052,381	+				+0.5
3,052,411	-	pxpB	LU632_RS16145	0.13	+0.1
3,052,532	-	pxpB	LU632_RS16145	0.32	+1.2
3,052,535	+	pxpB	LU632_RS16145	0.32	-0.8
3,052,535	+	pxpB	LU632_RS16145	0.32	-0.4
3,052,536	-	pxpB	LU632_RS16145	0.32	-1.1
3,052,536	-	pxpB	LU632_RS16145	0.32	-0.5
3,052,536	-	pxpB	LU632_RS16145	0.32	-1.1
3,052,536	-	pxpB	LU632_RS16145	0.32	-0.3
3,052,546	+	pxpB	LU632_RS16145	0.34	+2.0
3,052,547	-	pxpB	LU632_RS16145	0.34	+0.1
3,052,547	-	pxpB	LU632_RS16145	0.34	-0.4
3,052,547	-	pxpB	LU632_RS16145	0.34	-0.5
3,052,693	-	pxpB	LU632_RS16145	0.57	+0.7
3,052,976	-				-0.2
3,053,004	+				+0.5
3,053,004	+				+0.0
3,053,018	+				-2.3
3,053,018	+				-0.7
3,053,018	+				-0.6
3,053,019	-				+0.0
3,053,019	-				-1.3
3,053,019	-				+0.9
3,053,019	-				+0.0
3,053,019	-				-2.5
3,053,019	-				-0.7
3,053,019	-				+0.2
3,053,023	-				-1.2
3,053,039	-				-0.1
3,053,130	-				-0.8
3,053,334	+		LU632_RS16150	0.33	+0.9
3,053,447	-		LU632_RS16150	0.49	+1.0
3,053,447	-		LU632_RS16150	0.49	+0.5
3,053,482	+		LU632_RS16150	0.53	+0.0
3,053,605	+		LU632_RS16150	0.70	+3.1
3,053,605	+		LU632_RS16150	0.70	+0.2
3,053,647	+		LU632_RS16150	0.75	+0.5
3,054,068	-				+0.6
3,054,171	+	phrB	LU632_RS16155	0.16	+3.5
3,054,245	+	phrB	LU632_RS16155	0.21	+0.5
3,054,246	-	phrB	LU632_RS16155	0.21	-0.1
3,054,261	+	phrB	LU632_RS16155	0.22	+0.3
3,054,261	+	phrB	LU632_RS16155	0.22	-1.1
3,054,261	+	phrB	LU632_RS16155	0.22	-0.5
3,054,261	+	phrB	LU632_RS16155	0.22	+0.2
3,054,262	-	phrB	LU632_RS16155	0.22	-0.3
3,054,262	-	phrB	LU632_RS16155	0.22	+0.3
3,054,356	-	phrB	LU632_RS16155	0.29	-2.1
3,054,503	+	phrB	LU632_RS16155	0.39	-0.7
3,054,553	+	phrB	LU632_RS16155	0.43	+0.4
3,054,637	-	phrB	LU632_RS16155	0.49	-2.1