Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15820

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
2,990,494	-				-1.7
2,990,512	-				-1.7
2,990,512	-				+0.2
2,990,512	-				-0.7
2,990,514	+				-2.0
2,990,548	+				-1.7
2,990,548	+				-0.6
2,990,548	+				+0.8
2,990,569	+		LU632_RS15815	0.10	-0.4
2,990,569	+		LU632_RS15815	0.10	-1.9
2,990,570	-		LU632_RS15815	0.10	+0.1
2,990,570	-		LU632_RS15815	0.10	+0.4
2,990,599	+		LU632_RS15815	0.16	+0.2
2,990,613	+		LU632_RS15815	0.19	+1.4
2,990,645	+		LU632_RS15815	0.26	-1.0
2,990,645	+		LU632_RS15815	0.26	-1.9
2,990,646	-		LU632_RS15815	0.26	-0.2
2,990,917	-		LU632_RS15815	0.83	+1.4
2,991,007	-				-1.3
2,991,018	-				+0.0
2,991,018	-				+0.4
2,991,018	-				-0.0
2,991,074	-				+0.4
2,991,117	-				+1.2
2,991,232	-				+1.2
2,991,232	-				+0.5
2,991,251	+				-1.2
2,991,255	+				+0.6
2,991,255	+				-1.2
2,991,255	+				-0.3
2,991,255	+				+0.3
2,991,255	+				+1.7
2,991,256	-				-0.4
2,991,294	-				-1.7
2,991,372	-				-0.6
2,991,453	+		LU632_RS15820	0.14	-0.3
2,991,471	+		LU632_RS15820	0.15	-0.6
2,991,510	-		LU632_RS15820	0.19	+0.4
2,991,515	+		LU632_RS15820	0.19	+0.7
2,991,561	+		LU632_RS15820	0.23	+0.4
2,991,564	+		LU632_RS15820	0.23	+0.8
2,991,564	+		LU632_RS15820	0.23	-1.2
2,991,564	+		LU632_RS15820	0.23	+1.1
2,991,565	-		LU632_RS15820	0.24	+0.8
2,991,565	-		LU632_RS15820	0.24	-0.8
2,991,565	-		LU632_RS15820	0.24	+1.0
2,991,565	-		LU632_RS15820	0.24	+0.4
2,991,568	+		LU632_RS15820	0.24	+0.3
2,991,568	+		LU632_RS15820	0.24	-1.6
2,991,568	+		LU632_RS15820	0.24	-0.3
2,991,568	+		LU632_RS15820	0.24	-0.2
2,991,569	-		LU632_RS15820	0.24	-2.2
2,991,569	-		LU632_RS15820	0.24	-0.3
2,991,569	-		LU632_RS15820	0.24	+1.4
2,991,569	-		LU632_RS15820	0.24	-1.6
2,991,689	+		LU632_RS15820	0.34	+0.4
2,991,690	-		LU632_RS15820	0.34	+0.2
2,991,732	+		LU632_RS15820	0.38	+0.6
2,991,892	-		LU632_RS15820	0.52	+2.4
2,991,895	-		LU632_RS15820	0.52	+0.6
2,991,895	-		LU632_RS15820	0.52	+0.4
2,991,897	+		LU632_RS15820	0.52	-2.9
2,991,897	+		LU632_RS15820	0.52	-1.2
2,991,897	+		LU632_RS15820	0.52	-0.9
2,991,897	+		LU632_RS15820	0.52	+0.7
2,991,898	-		LU632_RS15820	0.53	+0.4
2,991,898	-		LU632_RS15820	0.53	-3.2
2,991,898	-		LU632_RS15820	0.53	+0.4
2,991,899	+		LU632_RS15820	0.53	-1.2
2,991,941	+		LU632_RS15820	0.56	-2.6
2,991,941	+		LU632_RS15820	0.56	+0.8
2,991,942	-		LU632_RS15820	0.56	-1.3
2,991,948	-		LU632_RS15820	0.57	+0.7
2,991,996	+		LU632_RS15820	0.61	+1.0
2,991,996	+		LU632_RS15820	0.61	+1.5
2,991,996	+		LU632_RS15820	0.61	-0.5
2,991,997	-		LU632_RS15820	0.61	+0.9
2,991,997	-		LU632_RS15820	0.61	+0.9
2,991,997	-		LU632_RS15820	0.61	+0.4
2,992,052	+		LU632_RS15820	0.66	+0.4
2,992,103	+		LU632_RS15820	0.70	-1.2
2,992,153	+		LU632_RS15820	0.75	-1.1
2,992,338	+				+0.5
2,992,338	+				+0.2
2,992,338	+				-0.4
2,992,338	+				-0.3
2,992,339	-				+0.4
2,992,339	-				+0.4
2,992,449	+				-0.2
2,992,506	+				-0.7
2,992,789	-				-0.7
2,992,834	-				+1.7
2,992,889	+				-1.2
2,993,076	+		LU632_RS15825	0.22	-0.4
2,993,076	+		LU632_RS15825	0.22	+1.2
2,993,077	-		LU632_RS15825	0.23	-0.6
2,993,078	+		LU632_RS15825	0.23	+0.9
2,993,078	+		LU632_RS15825	0.23	+2.2
2,993,126	+		LU632_RS15825	0.28	-1.6
2,993,127	-		LU632_RS15825	0.29	+0.4
2,993,129	+		LU632_RS15825	0.29	-2.8
2,993,130	-		LU632_RS15825	0.29	-0.7
2,993,222	+		LU632_RS15825	0.40	-3.2
2,993,241	+		LU632_RS15825	0.42	-0.4
2,993,241	+		LU632_RS15825	0.42	+1.4
2,993,244	-		LU632_RS15825	0.42	+1.4
2,993,318	+		LU632_RS15825	0.51	-0.6
2,993,367	-		LU632_RS15825	0.57	+1.2
2,993,410	+		LU632_RS15825	0.62	+3.2