Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12770

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
2,429,962	+	trpCF	LU632_RS12765	0.32	-0.4
2,429,988	+	trpCF	LU632_RS12765	0.34	-0.6
2,429,989	-	trpCF	LU632_RS12765	0.34	-3.5
2,429,989	-	trpCF	LU632_RS12765	0.34	-0.4
2,430,030	-	trpCF	LU632_RS12765	0.37	+0.3
2,430,150	+	trpCF	LU632_RS12765	0.46	-1.1
2,430,151	-	trpCF	LU632_RS12765	0.46	-0.5
2,430,178	-	trpCF	LU632_RS12765	0.48	+2.9
2,430,184	+	trpCF	LU632_RS12765	0.48	+1.4
2,430,184	+	trpCF	LU632_RS12765	0.48	-0.7
2,430,298	-	trpCF	LU632_RS12765	0.57	+1.2
2,430,358	+	trpCF	LU632_RS12765	0.61	-2.8
2,430,359	-	trpCF	LU632_RS12765	0.61	+3.1
2,430,441	+	trpCF	LU632_RS12765	0.67	+0.9
2,430,441	+	trpCF	LU632_RS12765	0.67	+0.3
2,430,442	-	trpCF	LU632_RS12765	0.67	+0.1
2,430,442	-	trpCF	LU632_RS12765	0.67	-0.5
2,430,445	+	trpCF	LU632_RS12765	0.68	-1.5
2,430,445	+	trpCF	LU632_RS12765	0.68	+0.6
2,430,446	-	trpCF	LU632_RS12765	0.68	-0.1
2,430,584	+	trpCF	LU632_RS12765	0.78	-0.9
2,430,590	+	trpCF	LU632_RS12765	0.78	-1.5
2,430,609	+	trpCF	LU632_RS12765	0.80	-1.3
2,430,610	-	trpCF	LU632_RS12765	0.80	-0.7
2,430,843	+				+0.3
2,430,844	-				-1.0
2,430,946	+				+0.1
2,430,978	+				-0.2
2,430,978	+				-3.2
2,430,978	+				+0.1
2,430,979	-				-2.3
2,430,979	-				-2.3
2,431,087	-	trpB	LU632_RS12770	0.13	-0.4
2,431,158	-	trpB	LU632_RS12770	0.19	-2.5
2,431,329	+	trpB	LU632_RS12770	0.33	+1.2
2,431,329	+	trpB	LU632_RS12770	0.33	+0.2
2,431,329	+	trpB	LU632_RS12770	0.33	-0.8
2,431,369	+	trpB	LU632_RS12770	0.36	+1.9
2,431,488	+	trpB	LU632_RS12770	0.46	-1.0
2,431,488	+	trpB	LU632_RS12770	0.46	-0.6
2,431,488	+	trpB	LU632_RS12770	0.46	-0.4
2,431,488	+	trpB	LU632_RS12770	0.46	-0.7
2,431,488	+	trpB	LU632_RS12770	0.46	-1.7
2,431,489	-	trpB	LU632_RS12770	0.46	-2.3
2,431,489	-	trpB	LU632_RS12770	0.46	+0.3
2,431,489	-	trpB	LU632_RS12770	0.46	+2.6
2,431,489	-	trpB	LU632_RS12770	0.46	-0.0
2,431,489	-	trpB	LU632_RS12770	0.46	+0.3
2,431,490	+	trpB	LU632_RS12770	0.47	+0.3
2,431,491	-	trpB	LU632_RS12770	0.47	+0.8
2,431,491	-	trpB	LU632_RS12770	0.47	+0.3
2,431,716	-	trpB	LU632_RS12770	0.65	-1.6
2,431,763	+	trpB	LU632_RS12770	0.69	-1.0
2,431,767	+	trpB	LU632_RS12770	0.70	+1.0
2,431,767	+	trpB	LU632_RS12770	0.70	-2.3
2,431,768	-	trpB	LU632_RS12770	0.70	-0.6
2,431,768	-	trpB	LU632_RS12770	0.70	-0.5
2,431,824	+	trpB	LU632_RS12770	0.75	-1.3
2,431,824	+	trpB	LU632_RS12770	0.75	-0.1
2,431,824	+	trpB	LU632_RS12770	0.75	+1.5
2,431,881	-	trpB	LU632_RS12770	0.79	-0.9
2,431,903	-	trpB	LU632_RS12770	0.81	-1.3
2,431,903	-	trpB	LU632_RS12770	0.81	-2.3
2,432,050	+				-0.1
2,432,081	+				-3.2
2,432,082	-				-2.0
2,432,082	-				+0.1
2,432,082	-				-1.9
2,432,083	+				+0.6
2,432,083	+				+0.6
2,432,083	+				+0.2
2,432,083	+				-2.5
2,432,083	+				-0.0
2,432,083	+				-1.3
2,432,084	-				-2.3
2,432,084	-				-0.7
2,432,122	+				+0.3
2,432,122	+				+1.4
2,432,123	-				-2.4
2,432,135	+				-1.7
2,432,137	+				+0.3
2,432,145	+				-3.3
2,432,247	+	trpA	LU632_RS12775	0.15	-3.0
2,432,247	+	trpA	LU632_RS12775	0.15	+2.5
2,432,280	+	trpA	LU632_RS12775	0.19	-1.2
2,432,280	+	trpA	LU632_RS12775	0.19	-0.6
2,432,281	-	trpA	LU632_RS12775	0.19	+0.3
2,432,396	-	trpA	LU632_RS12775	0.33	-0.7
2,432,430	-	trpA	LU632_RS12775	0.38	-2.5
2,432,430	-	trpA	LU632_RS12775	0.38	-0.4
2,432,430	-	trpA	LU632_RS12775	0.38	+0.5
2,432,430	-	trpA	LU632_RS12775	0.38	-3.4
2,432,430	-	trpA	LU632_RS12775	0.38	-1.8
2,432,430	-	trpA	LU632_RS12775	0.38	-0.4
2,432,430	-	trpA	LU632_RS12775	0.38	+0.3
2,432,644	+	trpA	LU632_RS12775	0.64	+0.3
2,432,644	+	trpA	LU632_RS12775	0.64	+1.1
2,432,645	-	trpA	LU632_RS12775	0.64	-0.7
2,432,645	-	trpA	LU632_RS12775	0.64	-0.4
2,432,649	-	trpA	LU632_RS12775	0.65	-0.3
2,432,736	+	trpA	LU632_RS12775	0.76	-1.2
2,433,032	+				-3.0
2,433,076	-				+2.0
2,433,077	-				+0.3
2,433,116	+				+0.7
2,433,116	+				-1.1