Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12220

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
2,318,259	+	zntB	LU632_RS12210	0.74	-0.7
2,318,260	-	zntB	LU632_RS12210	0.74	-3.2
2,318,260	-	zntB	LU632_RS12210	0.74	-2.3
2,318,260	-	zntB	LU632_RS12210	0.74	-0.4
2,318,347	+	zntB	LU632_RS12210	0.83	-0.2
2,318,376	+	zntB	LU632_RS12210	0.86	-5.7
2,318,389	+	zntB	LU632_RS12210	0.87	+1.8
2,318,389	+	zntB	LU632_RS12210	0.87	-0.1
2,318,416	-	zntB	LU632_RS12210	0.90	+1.9
2,318,451	+				+0.6
2,318,473	-				-2.7
2,318,529	-				-3.7
2,318,556	+				-0.7
2,318,581	-				-0.5
2,318,581	-				-0.2
2,318,596	-				+1.1
2,318,672	-				+0.3
2,318,683	+				+0.9
2,318,697	-				+1.2
2,318,701	+				+0.6
2,318,824	-				+1.2
2,318,853	-				+0.9
2,318,853	-				-1.0
2,318,874	+				-1.3
2,318,875	-				-1.5
2,318,995	+		LU632_RS12215	0.45	+0.5
2,319,033	+		LU632_RS12215	0.56	+1.4
2,319,040	-		LU632_RS12215	0.58	-3.5
2,319,040	-		LU632_RS12215	0.58	-1.9
2,319,044	-		LU632_RS12215	0.59	-1.0
2,319,047	+		LU632_RS12215	0.60	-0.2
2,319,047	+		LU632_RS12215	0.60	+0.4
2,319,047	+		LU632_RS12215	0.60	+1.3
2,319,047	+		LU632_RS12215	0.60	-0.0
2,319,047	+		LU632_RS12215	0.60	-1.2
2,320,392	+				+0.1
2,320,393	-				+0.5
2,320,488	-				-0.3
2,320,511	+				+0.7
2,320,530	-				-0.4
2,320,541	-				+0.2
2,320,602	-		LU632_RS12225	0.13	-0.5
2,320,693	+		LU632_RS12225	0.19	-0.7
2,320,693	+		LU632_RS12225	0.19	-0.3
2,320,693	+		LU632_RS12225	0.19	+1.0
2,320,693	+		LU632_RS12225	0.19	-0.3
2,320,694	-		LU632_RS12225	0.19	-1.1
2,320,694	-		LU632_RS12225	0.19	-0.4
2,320,786	-		LU632_RS12225	0.25	+1.3
2,320,802	+		LU632_RS12225	0.26	+2.0
2,320,802	+		LU632_RS12225	0.26	+0.5
2,320,803	-		LU632_RS12225	0.26	-0.5
2,320,803	-		LU632_RS12225	0.26	+0.4
2,320,900	+		LU632_RS12225	0.32	+2.3
2,320,928	-		LU632_RS12225	0.34	+0.3
2,321,015	-		LU632_RS12225	0.40	+0.3
2,321,106	+		LU632_RS12225	0.45	-1.1
2,321,171	+		LU632_RS12225	0.50	-3.5
2,321,174	-		LU632_RS12225	0.50	-0.8
2,321,174	-		LU632_RS12225	0.50	+0.7
2,321,182	-		LU632_RS12225	0.50	-1.5
2,321,187	-		LU632_RS12225	0.51	+2.7
2,321,187	-		LU632_RS12225	0.51	-0.3
2,321,187	-		LU632_RS12225	0.51	-0.7
2,321,190	+		LU632_RS12225	0.51	-0.0
2,321,269	+		LU632_RS12225	0.56	-0.7
2,321,269	+		LU632_RS12225	0.56	+0.2
2,321,270	-		LU632_RS12225	0.56	-1.6
2,321,270	-		LU632_RS12225	0.56	+1.2
2,321,287	-		LU632_RS12225	0.57	-0.4
2,321,290	-		LU632_RS12225	0.57	-0.4
2,321,290	-		LU632_RS12225	0.57	-0.2
2,321,291	+		LU632_RS12225	0.57	+1.6
2,321,292	-		LU632_RS12225	0.57	+0.5
2,321,292	-		LU632_RS12225	0.57	-1.6
2,321,295	+		LU632_RS12225	0.58	+0.0