Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11685

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
2,220,906	-		LU632_RS11680	0.20	+0.7
2,221,056	+		LU632_RS11680	0.32	-3.1
2,221,072	+		LU632_RS11680	0.33	-1.0
2,221,072	+		LU632_RS11680	0.33	+0.4
2,221,072	+		LU632_RS11680	0.33	-0.7
2,221,072	+		LU632_RS11680	0.33	+0.3
2,221,072	+		LU632_RS11680	0.33	+4.0
2,221,199	-		LU632_RS11680	0.44	+0.9
2,221,214	+		LU632_RS11680	0.45	-0.0
2,221,244	+		LU632_RS11680	0.47	-1.1
2,221,275	+		LU632_RS11680	0.50	-1.8
2,221,296	-		LU632_RS11680	0.51	-1.2
2,221,296	-		LU632_RS11680	0.51	+1.3
2,221,330	-		LU632_RS11680	0.54	-0.6
2,221,653	+		LU632_RS11680	0.80	-1.1
2,221,715	-		LU632_RS11680	0.85	+1.8
2,221,909	+				-0.1
2,221,909	+				-1.1
2,221,909	+				+0.7
2,221,909	+				-0.3
2,221,909	+				+1.1
2,221,909	+				-1.7
2,221,909	+				-2.3
2,221,909	+				+1.7
2,221,909	+				+1.1
2,221,909	+				-2.1
2,221,910	-				+0.7
2,221,910	-				-0.1
2,221,910	-				-0.1
2,221,910	-				+2.1
2,221,910	-				-3.3
2,221,910	-				-0.5
2,221,910	-				+0.4
2,221,910	-				+0.2
2,221,910	-				-0.0
2,221,910	-				+0.5
2,221,913	+				-0.9
2,221,913	+				-1.3
2,221,913	+				-0.4
2,221,914	-				+1.5
2,221,914	-				+0.4
2,221,914	-				-2.1
2,221,914	-				-1.7
2,221,914	-				-2.7
2,221,989	+				+1.3
2,221,990	-				+0.3
2,222,046	-				-0.5
2,222,063	-	rhaB	LU632_RS11685	0.11	-1.2
2,222,153	+	rhaB	LU632_RS11685	0.17	-0.6
2,222,231	+	rhaB	LU632_RS11685	0.22	-1.3
2,222,232	-	rhaB	LU632_RS11685	0.22	-0.1
2,222,232	-	rhaB	LU632_RS11685	0.22	+0.7
2,222,232	-	rhaB	LU632_RS11685	0.22	-1.3
2,222,232	-	rhaB	LU632_RS11685	0.22	-1.1
2,222,242	-	rhaB	LU632_RS11685	0.23	-1.7
2,222,242	-	rhaB	LU632_RS11685	0.23	+1.5
2,222,344	+	rhaB	LU632_RS11685	0.30	+0.3
2,222,444	+	rhaB	LU632_RS11685	0.37	+1.8
2,222,468	+	rhaB	LU632_RS11685	0.38	+0.4
2,222,534	+	rhaB	LU632_RS11685	0.43	+0.0
2,222,534	+	rhaB	LU632_RS11685	0.43	+2.7
2,222,535	-	rhaB	LU632_RS11685	0.43	+1.2
2,222,535	-	rhaB	LU632_RS11685	0.43	+0.6
2,222,535	-	rhaB	LU632_RS11685	0.43	+1.3
2,222,565	+	rhaB	LU632_RS11685	0.45	+0.1
2,222,603	-	rhaB	LU632_RS11685	0.47	+1.5
2,222,603	-	rhaB	LU632_RS11685	0.47	-1.5
2,222,752	+	rhaB	LU632_RS11685	0.58	+2.6
2,222,845	+	rhaB	LU632_RS11685	0.64	+1.5
2,222,848	+	rhaB	LU632_RS11685	0.64	+0.2
2,222,848	+	rhaB	LU632_RS11685	0.64	-0.7
2,222,848	+	rhaB	LU632_RS11685	0.64	+0.6
2,222,848	+	rhaB	LU632_RS11685	0.64	+0.3
2,222,849	-	rhaB	LU632_RS11685	0.64	-0.0
2,222,850	+	rhaB	LU632_RS11685	0.64	+0.3
2,222,851	-	rhaB	LU632_RS11685	0.64	+3.8
2,222,851	-	rhaB	LU632_RS11685	0.64	+0.3
2,222,964	+	rhaB	LU632_RS11685	0.72	-0.4
2,222,974	+	rhaB	LU632_RS11685	0.73	+1.6
2,222,975	-	rhaB	LU632_RS11685	0.73	+0.3
2,222,975	-	rhaB	LU632_RS11685	0.73	+0.1
2,222,975	-	rhaB	LU632_RS11685	0.73	-2.1
2,222,975	-	rhaB	LU632_RS11685	0.73	+0.1
2,223,006	+	rhaB	LU632_RS11685	0.75	-0.3
2,223,007	-	rhaB	LU632_RS11685	0.75	+1.1
2,223,007	-	rhaB	LU632_RS11685	0.75	-0.5
2,223,007	-	rhaB	LU632_RS11685	0.75	+0.3
2,223,007	-	rhaB	LU632_RS11685	0.75	+1.2
2,223,007	-	rhaB	LU632_RS11685	0.75	+2.0
2,223,007	-	rhaB	LU632_RS11685	0.75	-1.1
2,223,073	-	rhaB	LU632_RS11685	0.79	+0.3
2,223,163	+	rhaB	LU632_RS11685	0.85	-1.8
2,223,164	-	rhaB	LU632_RS11685	0.86	+0.9
2,223,199	+	rhaB	LU632_RS11685	0.88	-1.2
2,223,199	+	rhaB	LU632_RS11685	0.88	-0.7
2,223,513	+				+0.8
2,223,592	+				+0.6
2,223,615	+				-0.5
2,223,616	-				+2.7
2,223,635	+				+2.8
2,223,635	+				+0.4
2,223,662	-				+0.9
2,223,665	+				+1.2
2,223,793	-	rhaS	LU632_RS11690	0.14	+1.5
2,223,793	-	rhaS	LU632_RS11690	0.14	+1.9
2,223,873	+	rhaS	LU632_RS11690	0.24	-0.5
2,223,874	-	rhaS	LU632_RS11690	0.24	-2.6
2,223,896	+	rhaS	LU632_RS11690	0.26	-0.1
2,223,918	+	rhaS	LU632_RS11690	0.29	-0.1
2,223,933	+	rhaS	LU632_RS11690	0.31	+0.2
2,223,934	-	rhaS	LU632_RS11690	0.31	-1.3
2,223,935	+	rhaS	LU632_RS11690	0.31	-1.0
2,223,935	+	rhaS	LU632_RS11690	0.31	-1.1
2,223,935	+	rhaS	LU632_RS11690	0.31	-0.8
2,223,936	-	rhaS	LU632_RS11690	0.31	-0.5
2,223,936	-	rhaS	LU632_RS11690	0.31	+0.4
2,224,036	+	rhaS	LU632_RS11690	0.43	-2.5
2,224,036	+	rhaS	LU632_RS11690	0.43	+0.6
2,224,036	+	rhaS	LU632_RS11690	0.43	+1.3
2,224,037	-	rhaS	LU632_RS11690	0.43	-1.3
2,224,060	+	rhaS	LU632_RS11690	0.46	+0.1
2,224,257	+	rhaS	LU632_RS11690	0.70	+0.5
2,224,285	+	rhaS	LU632_RS11690	0.73	+1.6
2,224,285	+	rhaS	LU632_RS11690	0.73	-1.2
2,224,290	+	rhaS	LU632_RS11690	0.74	+1.3
2,224,290	+	rhaS	LU632_RS11690	0.74	-0.0
2,224,291	-	rhaS	LU632_RS11690	0.74	+2.1
2,224,291	-	rhaS	LU632_RS11690	0.74	+0.3
2,224,335	-	rhaS	LU632_RS11690	0.79	-0.8
2,224,372	-	rhaS	LU632_RS11690	0.84	-0.6
2,224,372	-	rhaS	LU632_RS11690	0.84	+0.9