Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11315

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnth and LU632_RS11310 overlap by 4 nucleotidesLU632_RS11310 and rsxG overlap by 8 nucleotidesrsxG and rsxD overlap by 1 nucleotides LU632_RS11305: nth - endonuclease III, at 2,160,179 to 2,160,811 nth LU632_RS11310: LU632_RS11310 - electron transport complex subunit E, at 2,160,808 to 2,161,509 _RS11310 LU632_RS11315: rsxG - electron transport complex subunit RsxG, at 2,161,502 to 2,162,134 rsxG LU632_RS11320: rsxD - electron transport complex subunit RsxD, at 2,162,134 to 2,163,195 rsxD Position (kb) 2161 2162 2163Strain fitness (log2 ratio) -2 -1 0 1at 2160.541 kb on + strand, within nthat 2160.541 kb on + strand, within nthat 2160.588 kb on + strand, within nthat 2160.799 kb on + strandat 2160.800 kb on - strandat 2160.806 kb on - strandat 2160.811 kb on + strandat 2160.825 kb on + strandat 2160.900 kb on - strand, within LU632_RS11310

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
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2,160,541 + nth LU632_RS11305 0.57 +0.4
2,160,541 + nth LU632_RS11305 0.57 +0.5
2,160,588 + nth LU632_RS11305 0.65 +1.6
2,160,799 + +1.0
2,160,800 - -2.2
2,160,806 - -2.3
2,160,811 + -1.2
2,160,825 + -1.3
2,160,900 - LU632_RS11310 0.13 +1.5

Or see this region's nucleotide sequence