Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10275

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS10270 and mdoH overlap by 8 nucleotidesmdoH and LU632_RS10280 are separated by 137 nucleotidesLU632_RS10280 and LU632_RS10285 are separated by 6 nucleotides LU632_RS10270: LU632_RS10270 - glucan biosynthesis protein G, at 1,960,920 to 1,962,515 _RS10270 LU632_RS10275: mdoH - glucans biosynthesis glucosyltransferase MdoH, at 1,962,508 to 1,965,075 mdoH LU632_RS10280: LU632_RS10280 - YceK/YidQ family lipoprotein, at 1,965,213 to 1,965,452 _RS10280 LU632_RS10285: LU632_RS10285 - MysB family protein, at 1,965,459 to 1,965,857 _RS10285 Position (kb) 1962 1963 1964 1965 1966Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1961.735 kb on + strand, within LU632_RS10270at 1962.117 kb on + strand, within LU632_RS10270at 1962.118 kb on - strand, within LU632_RS10270at 1962.212 kb on + strand, within LU632_RS10270at 1962.216 kb on - strand, within LU632_RS10270at 1962.401 kb on + strandat 1962.492 kb on + strandat 1962.538 kb on + strandat 1962.538 kb on + strandat 1963.102 kb on + strand, within mdoHat 1963.103 kb on - strand, within mdoHat 1963.103 kb on - strand, within mdoHat 1963.216 kb on + strand, within mdoHat 1963.217 kb on - strand, within mdoHat 1963.221 kb on + strand, within mdoHat 1963.254 kb on + strand, within mdoHat 1963.400 kb on - strand, within mdoHat 1963.524 kb on - strand, within mdoHat 1963.556 kb on - strand, within mdoHat 1963.557 kb on + strand, within mdoHat 1963.557 kb on + strand, within mdoHat 1963.557 kb on + strand, within mdoHat 1963.557 kb on + strand, within mdoHat 1963.558 kb on - strand, within mdoHat 1963.558 kb on - strand, within mdoHat 1963.561 kb on + strand, within mdoHat 1963.561 kb on + strand, within mdoHat 1963.561 kb on + strand, within mdoHat 1963.563 kb on + strand, within mdoHat 1963.635 kb on + strand, within mdoHat 1963.873 kb on - strand, within mdoHat 1964.101 kb on + strand, within mdoHat 1964.164 kb on - strand, within mdoHat 1964.164 kb on - strand, within mdoHat 1964.164 kb on - strand, within mdoHat 1964.164 kb on - strand, within mdoHat 1964.164 kb on - strand, within mdoHat 1964.352 kb on + strand, within mdoHat 1964.705 kb on - strand, within mdoHat 1964.740 kb on + strand, within mdoHat 1964.782 kb on - strand, within mdoHat 1965.004 kb on + strandat 1965.005 kb on - strandat 1965.026 kb on - strandat 1965.262 kb on + strand, within LU632_RS10280at 1965.262 kb on + strand, within LU632_RS10280at 1965.262 kb on + strand, within LU632_RS10280at 1965.262 kb on + strand, within LU632_RS10280at 1965.263 kb on - strand, within LU632_RS10280at 1965.263 kb on - strand, within LU632_RS10280at 1965.281 kb on + strand, within LU632_RS10280at 1965.282 kb on - strand, within LU632_RS10280at 1965.324 kb on + strand, within LU632_RS10280at 1965.377 kb on + strand, within LU632_RS10280at 1965.453 kb on + strandat 1965.454 kb on - strandat 1965.454 kb on - strandat 1965.457 kb on + strandat 1965.457 kb on + strandat 1965.458 kb on - strandat 1965.466 kb on + strandat 1965.466 kb on + strandat 1965.466 kb on + strandat 1965.467 kb on - strandat 1965.483 kb on - strandat 1965.578 kb on + strand, within LU632_RS10285at 1965.579 kb on - strand, within LU632_RS10285at 1965.716 kb on + strand, within LU632_RS10285at 1965.716 kb on + strand, within LU632_RS10285at 1965.716 kb on + strand, within LU632_RS10285at 1965.717 kb on - strand, within LU632_RS10285at 1965.717 kb on - strand, within LU632_RS10285at 1965.717 kb on - strand, within LU632_RS10285at 1965.717 kb on - strand, within LU632_RS10285at 1965.717 kb on - strand, within LU632_RS10285at 1965.717 kb on - strand, within LU632_RS10285at 1965.740 kb on - strand, within LU632_RS10285at 1965.949 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
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1,961,735 + LU632_RS10270 0.51 -2.4
1,962,117 + LU632_RS10270 0.75 -1.4
1,962,118 - LU632_RS10270 0.75 +0.4
1,962,212 + LU632_RS10270 0.81 -3.9
1,962,216 - LU632_RS10270 0.81 +0.4
1,962,401 + -1.2
1,962,492 + -3.1
1,962,538 + -2.2
1,962,538 + -3.1
1,963,102 + mdoH LU632_RS10275 0.23 +0.4
1,963,103 - mdoH LU632_RS10275 0.23 +0.4
1,963,103 - mdoH LU632_RS10275 0.23 -2.2
1,963,216 + mdoH LU632_RS10275 0.28 -1.9
1,963,217 - mdoH LU632_RS10275 0.28 +2.0
1,963,221 + mdoH LU632_RS10275 0.28 -2.2
1,963,254 + mdoH LU632_RS10275 0.29 -2.2
1,963,400 - mdoH LU632_RS10275 0.35 -2.6
1,963,524 - mdoH LU632_RS10275 0.40 +0.4
1,963,556 - mdoH LU632_RS10275 0.41 -0.6
1,963,557 + mdoH LU632_RS10275 0.41 +0.4
1,963,557 + mdoH LU632_RS10275 0.41 +2.2
1,963,557 + mdoH LU632_RS10275 0.41 +0.4
1,963,557 + mdoH LU632_RS10275 0.41 +0.4
1,963,558 - mdoH LU632_RS10275 0.41 +0.4
1,963,558 - mdoH LU632_RS10275 0.41 -1.6
1,963,561 + mdoH LU632_RS10275 0.41 -2.6
1,963,561 + mdoH LU632_RS10275 0.41 -1.2
1,963,561 + mdoH LU632_RS10275 0.41 -1.2
1,963,563 + mdoH LU632_RS10275 0.41 -1.6
1,963,635 + mdoH LU632_RS10275 0.44 -0.6
1,963,873 - mdoH LU632_RS10275 0.53 -0.6
1,964,101 + mdoH LU632_RS10275 0.62 +0.4
1,964,164 - mdoH LU632_RS10275 0.64 -1.6
1,964,164 - mdoH LU632_RS10275 0.64 -2.8
1,964,164 - mdoH LU632_RS10275 0.64 -1.2
1,964,164 - mdoH LU632_RS10275 0.64 -2.2
1,964,164 - mdoH LU632_RS10275 0.64 -1.2
1,964,352 + mdoH LU632_RS10275 0.72 -1.2
1,964,705 - mdoH LU632_RS10275 0.86 +0.4
1,964,740 + mdoH LU632_RS10275 0.87 -0.3
1,964,782 - mdoH LU632_RS10275 0.89 +0.4
1,965,004 + -2.4
1,965,005 - +0.4
1,965,026 - -3.9
1,965,262 + LU632_RS10280 0.20 -0.4
1,965,262 + LU632_RS10280 0.20 -2.2
1,965,262 + LU632_RS10280 0.20 +0.7
1,965,262 + LU632_RS10280 0.20 +1.0
1,965,263 - LU632_RS10280 0.21 +2.4
1,965,263 - LU632_RS10280 0.21 -1.8
1,965,281 + LU632_RS10280 0.28 +0.0
1,965,282 - LU632_RS10280 0.29 -1.3
1,965,324 + LU632_RS10280 0.46 +0.0
1,965,377 + LU632_RS10280 0.68 +1.5
1,965,453 + +2.0
1,965,454 - -2.2
1,965,454 - +0.5
1,965,457 + -0.7
1,965,457 + -0.2
1,965,458 - -2.4
1,965,466 + +0.2
1,965,466 + +2.4
1,965,466 + -0.1
1,965,467 - +1.9
1,965,483 - +0.8
1,965,578 + LU632_RS10285 0.30 -3.1
1,965,579 - LU632_RS10285 0.30 -0.3
1,965,716 + LU632_RS10285 0.64 -0.9
1,965,716 + LU632_RS10285 0.64 -1.7
1,965,716 + LU632_RS10285 0.64 -0.6
1,965,717 - LU632_RS10285 0.65 +0.7
1,965,717 - LU632_RS10285 0.65 +0.2
1,965,717 - LU632_RS10285 0.65 +0.5
1,965,717 - LU632_RS10285 0.65 -1.3
1,965,717 - LU632_RS10285 0.65 +2.1
1,965,717 - LU632_RS10285 0.65 +0.6
1,965,740 - LU632_RS10285 0.70 -0.3
1,965,949 + -0.3

Or see this region's nucleotide sequence