Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10060

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS10055 and LU632_RS10060 are separated by 78 nucleotidesLU632_RS10060 and LU632_RS10065 are separated by 3 nucleotides LU632_RS10055: LU632_RS10055 - IS481 family transposase, at 1,925,440 to 1,926,480 _RS10055 LU632_RS10060: LU632_RS10060 - DUF2057 family protein, at 1,926,559 to 1,926,921 _RS10060 LU632_RS10065: LU632_RS10065 - IS256 family transposase, at 1,926,925 to 1,928,133 _RS10065 Position (kb) 1926 1927Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 1926.628 kb on - strand, within LU632_RS10060at 1926.628 kb on - strand, within LU632_RS10060at 1926.669 kb on + strand, within LU632_RS10060at 1926.729 kb on + strand, within LU632_RS10060at 1926.763 kb on - strand, within LU632_RS10060at 1926.785 kb on - strand, within LU632_RS10060at 1926.862 kb on - strand, within LU632_RS10060

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
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1,926,628 - LU632_RS10060 0.19 +0.2
1,926,628 - LU632_RS10060 0.19 +0.4
1,926,669 + LU632_RS10060 0.30 +0.8
1,926,729 + LU632_RS10060 0.47 +6.7
1,926,763 - LU632_RS10060 0.56 +0.6
1,926,785 - LU632_RS10060 0.62 -0.6
1,926,862 - LU632_RS10060 0.83 +0.2

Or see this region's nucleotide sequence