Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10035

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
1,919,052	-	yccS	LU632_RS10025	0.89	-1.4
1,919,052	-	yccS	LU632_RS10025	0.89	+5.0
1,919,101	+				-2.9
1,919,101	+				+1.4
1,919,102	-				-0.5
1,919,102	-				+0.6
1,919,142	+				+0.6
1,919,143	-				+0.4
1,919,143	-				+1.4
1,919,143	-				+0.9
1,919,144	+				-1.2
1,919,144	+				+0.8
1,919,144	+				+0.6
1,919,145	-				-0.9
1,919,145	-				+0.8
1,919,940	+				+0.1
1,919,979	+				+0.1
1,920,000	+				+2.2
1,920,001	-				-0.6
1,920,003	-				-0.8
1,920,020	+				-0.3
1,920,093	+		LU632_RS10035	0.18	+0.6
1,920,097	-		LU632_RS10035	0.18	+0.3
1,920,097	-		LU632_RS10035	0.18	+0.4
1,920,097	-		LU632_RS10035	0.18	-0.2
1,920,102	-		LU632_RS10035	0.19	-1.2
1,920,153	-		LU632_RS10035	0.26	+0.8
1,920,153	-		LU632_RS10035	0.26	+0.4
1,920,216	-		LU632_RS10035	0.35	-0.9
1,920,216	-		LU632_RS10035	0.35	-0.2
1,920,317	+		LU632_RS10035	0.48	+1.7
1,920,318	-		LU632_RS10035	0.49	+0.4
1,920,318	-		LU632_RS10035	0.49	+0.8
1,920,350	-		LU632_RS10035	0.53	+0.4
1,920,367	-		LU632_RS10035	0.55	-0.9
1,920,367	-		LU632_RS10035	0.55	+1.1
1,920,406	-		LU632_RS10035	0.61	+0.8
1,920,439	+		LU632_RS10035	0.65	+0.9
1,920,441	+		LU632_RS10035	0.66	+1.0
1,920,441	+		LU632_RS10035	0.66	+1.2
1,920,441	+		LU632_RS10035	0.66	-1.2
1,920,442	-		LU632_RS10035	0.66	+0.8
1,920,442	-		LU632_RS10035	0.66	+0.0
1,920,541	+		LU632_RS10035	0.79	+0.7
1,920,542	-		LU632_RS10035	0.79	-1.4
1,920,584	+		LU632_RS10035	0.85	-1.1
1,920,619	+				+0.7
1,920,623	+				-0.1
1,920,624	-				-1.8
1,920,671	+				-0.7
1,920,671	+				-2.3
1,920,672	-				+0.6
1,920,691	+				-3.1
1,920,691	+				+1.0
1,920,692	-				-0.7