Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09980

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
1,908,073	+	pqiA	LU632_RS09975	0.22	-1.8
1,908,096	+	pqiA	LU632_RS09975	0.24	-0.6
1,908,129	+	pqiA	LU632_RS09975	0.27	-2.2
1,908,162	-	pqiA	LU632_RS09975	0.29	+0.4
1,908,496	-	pqiA	LU632_RS09975	0.56	-0.1
1,908,496	-	pqiA	LU632_RS09975	0.56	-2.8
1,908,582	-	pqiA	LU632_RS09975	0.62	+0.2
1,908,636	+	pqiA	LU632_RS09975	0.67	-2.9
1,908,811	-	pqiA	LU632_RS09975	0.80	+1.0
1,908,921	+	pqiA	LU632_RS09975	0.89	-0.3
1,908,922	-	pqiA	LU632_RS09975	0.89	-1.2
1,908,925	+	pqiA	LU632_RS09975	0.89	-0.4
1,908,944	+				+0.7
1,908,945	-				-0.6
1,909,090	+				+3.0
1,909,134	+				-1.9
1,909,135	-				-0.9
1,909,135	-				-0.1
1,909,238	-	pqiB	LU632_RS09980	0.12	-0.3
1,909,238	-	pqiB	LU632_RS09980	0.12	+0.4
1,909,416	+	pqiB	LU632_RS09980	0.22	-0.3
1,909,417	-	pqiB	LU632_RS09980	0.22	+0.4
1,909,430	+	pqiB	LU632_RS09980	0.23	-0.6
1,909,476	-	pqiB	LU632_RS09980	0.26	+0.4
1,909,482	+	pqiB	LU632_RS09980	0.26	+0.4
1,909,560	+	pqiB	LU632_RS09980	0.31	+0.4
1,909,860	+	pqiB	LU632_RS09980	0.49	-2.4
1,909,860	+	pqiB	LU632_RS09980	0.49	+0.2
1,909,861	-	pqiB	LU632_RS09980	0.49	-0.6
1,909,876	+	pqiB	LU632_RS09980	0.50	-0.6
1,909,895	+	pqiB	LU632_RS09980	0.52	+0.6
1,909,895	+	pqiB	LU632_RS09980	0.52	+0.4
1,909,990	+	pqiB	LU632_RS09980	0.57	+0.4
1,909,991	-	pqiB	LU632_RS09980	0.57	-0.1
1,909,991	-	pqiB	LU632_RS09980	0.57	-0.6
1,909,991	-	pqiB	LU632_RS09980	0.57	-1.9
1,910,143	+	pqiB	LU632_RS09980	0.67	+0.8
1,910,144	-	pqiB	LU632_RS09980	0.67	+0.9
1,910,199	-	pqiB	LU632_RS09980	0.70	-1.6
1,910,199	-	pqiB	LU632_RS09980	0.70	-0.6
1,910,330	-	pqiB	LU632_RS09980	0.78	-1.6
1,910,336	-	pqiB	LU632_RS09980	0.78	-0.2
1,910,338	+	pqiB	LU632_RS09980	0.79	-2.4
1,910,350	-	pqiB	LU632_RS09980	0.79	-1.8
1,910,469	+	pqiB	LU632_RS09980	0.87	+0.0
1,910,506	+	pqiB	LU632_RS09980	0.89	+0.1
1,910,543	+				-2.8
1,910,616	+				-1.3
1,910,623	+				-1.9
1,910,687	+				+1.6
1,910,688	-				-0.5
1,910,831	+	pqiC	LU632_RS09985	0.23	+0.7
1,910,838	+	pqiC	LU632_RS09985	0.24	+2.8
1,910,839	-	pqiC	LU632_RS09985	0.24	-2.4
1,910,839	-	pqiC	LU632_RS09985	0.24	-0.6
1,910,895	+	pqiC	LU632_RS09985	0.33	+0.1
1,910,895	+	pqiC	LU632_RS09985	0.33	-0.9
1,910,900	-	pqiC	LU632_RS09985	0.34	-2.2
1,910,916	+	pqiC	LU632_RS09985	0.36	-0.5
1,910,967	+	pqiC	LU632_RS09985	0.44	+0.4
1,911,126	+	pqiC	LU632_RS09985	0.70	+1.4
1,911,127	-	pqiC	LU632_RS09985	0.70	-2.8
1,911,362	-				+1.0
1,911,365	+				+1.0
1,911,366	-				+1.3
1,911,366	-				-0.8
1,911,650	+				-1.2
1,911,651	-				+0.6