Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt elyC and cmoM are separated by 128 nucleotides cmoM and mukF overlap by 8 nucleotides
LU632_RS09860: elyC - envelope biogenesis factor ElyC, at 1,877,338 to 1,878,099
elyC
LU632_RS09865: cmoM - tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM, at 1,878,228 to 1,879,016
cmoM
LU632_RS09870: mukF - chromosome partition protein MukF, at 1,879,009 to 1,880,331
mukF
Position (kb) 1878
1879
1880 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1877.268 kb on - strand at 1877.307 kb on + strand at 1877.307 kb on + strand at 1877.308 kb on - strand at 1877.414 kb on - strand at 1877.629 kb on - strand, within elyC at 1877.635 kb on - strand, within elyC at 1877.795 kb on - strand, within elyC at 1877.799 kb on + strand, within elyC at 1877.835 kb on - strand, within elyC at 1877.858 kb on + strand, within elyC at 1877.858 kb on + strand, within elyC at 1877.859 kb on - strand, within elyC at 1877.859 kb on - strand, within elyC at 1877.941 kb on + strand, within elyC at 1878.016 kb on + strand, within elyC at 1878.017 kb on - strand, within elyC at 1878.062 kb on - strand at 1878.062 kb on - strand at 1878.177 kb on + strand at 1878.177 kb on + strand at 1878.178 kb on - strand at 1878.188 kb on - strand at 1878.276 kb on - strand at 1878.279 kb on + strand at 1878.279 kb on + strand at 1878.279 kb on + strand at 1878.285 kb on - strand at 1878.518 kb on + strand, within cmoM at 1878.631 kb on + strand, within cmoM at 1878.633 kb on + strand, within cmoM at 1878.728 kb on + strand, within cmoM at 1878.728 kb on + strand, within cmoM at 1878.728 kb on + strand, within cmoM at 1878.801 kb on + strand, within cmoM at 1878.867 kb on + strand, within cmoM at 1878.867 kb on + strand, within cmoM at 1878.867 kb on + strand, within cmoM at 1878.867 kb on + strand, within cmoM at 1878.869 kb on + strand, within cmoM at 1878.869 kb on + strand, within cmoM at 1878.869 kb on + strand, within cmoM at 1878.966 kb on + strand at 1878.968 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 1,877,268 - -0.9 1,877,307 + +0.2 1,877,307 + +0.7 1,877,308 - +0.3 1,877,414 - -1.2 1,877,629 - elyC LU632_RS09860 0.38 +1.0 1,877,635 - elyC LU632_RS09860 0.39 -1.6 1,877,795 - elyC LU632_RS09860 0.60 -0.2 1,877,799 + elyC LU632_RS09860 0.60 -0.9 1,877,835 - elyC LU632_RS09860 0.65 -0.9 1,877,858 + elyC LU632_RS09860 0.68 +0.8 1,877,858 + elyC LU632_RS09860 0.68 +2.0 1,877,859 - elyC LU632_RS09860 0.68 -0.6 1,877,859 - elyC LU632_RS09860 0.68 -1.9 1,877,941 + elyC LU632_RS09860 0.79 +0.9 1,878,016 + elyC LU632_RS09860 0.89 +1.9 1,878,017 - elyC LU632_RS09860 0.89 +1.2 1,878,062 - +1.5 1,878,062 - +1.7 1,878,177 + -0.7 1,878,177 + -2.6 1,878,178 - -0.3 1,878,188 - +1.2 1,878,276 - +1.4 1,878,279 + +1.7 1,878,279 + +0.1 1,878,279 + -4.0 1,878,285 - -1.2 1,878,518 + cmoM LU632_RS09865 0.37 -3.0 1,878,631 + cmoM LU632_RS09865 0.51 +0.4 1,878,633 + cmoM LU632_RS09865 0.51 -0.7 1,878,728 + cmoM LU632_RS09865 0.63 -0.7 1,878,728 + cmoM LU632_RS09865 0.63 -0.3 1,878,728 + cmoM LU632_RS09865 0.63 -1.9 1,878,801 + cmoM LU632_RS09865 0.73 -1.3 1,878,867 + cmoM LU632_RS09865 0.81 -2.4 1,878,867 + cmoM LU632_RS09865 0.81 -0.9 1,878,867 + cmoM LU632_RS09865 0.81 +0.5 1,878,867 + cmoM LU632_RS09865 0.81 +1.2 1,878,869 + cmoM LU632_RS09865 0.81 +0.1 1,878,869 + cmoM LU632_RS09865 0.81 +1.9 1,878,869 + cmoM LU632_RS09865 0.81 +1.9 1,878,966 + +1.9 1,878,968 + -0.9
Or see this region's nucleotide sequence