Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdtD and mdtC are separated by 80 nucleotides mdtC and LU632_RS08690 overlap by 4 nucleotides
LU632_RS08680: mdtD - multidrug transporter subunit MdtD, at 1,626,909 to 1,628,229
mdtD
LU632_RS08685: mdtC - multidrug efflux RND transporter permease subunit MdtC, at 1,628,310 to 1,631,384
mdtC
LU632_RS08690: LU632_RS08690 - MdtB/MuxB family multidrug efflux RND transporter permease subunit, at 1,631,381 to 1,634,506
_RS08690
Position (kb) 1628
1629
1630
1631
1632 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1627.319 kb on + strand, within mdtD at 1627.323 kb on + strand, within mdtD at 1627.323 kb on + strand, within mdtD at 1627.324 kb on - strand, within mdtD at 1627.371 kb on - strand, within mdtD at 1627.377 kb on + strand, within mdtD at 1627.377 kb on + strand, within mdtD at 1627.379 kb on + strand, within mdtD at 1627.379 kb on + strand, within mdtD at 1627.386 kb on - strand, within mdtD at 1627.386 kb on - strand, within mdtD at 1627.467 kb on + strand, within mdtD at 1627.470 kb on - strand, within mdtD at 1627.470 kb on - strand, within mdtD at 1627.528 kb on + strand, within mdtD at 1627.529 kb on - strand, within mdtD at 1627.545 kb on + strand, within mdtD at 1627.546 kb on - strand, within mdtD at 1627.595 kb on - strand, within mdtD at 1627.661 kb on - strand, within mdtD at 1627.661 kb on - strand, within mdtD at 1627.795 kb on + strand, within mdtD at 1627.824 kb on + strand, within mdtD at 1627.897 kb on + strand, within mdtD at 1627.897 kb on + strand, within mdtD at 1627.898 kb on - strand, within mdtD at 1627.898 kb on - strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.908 kb on + strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.909 kb on - strand, within mdtD at 1627.999 kb on + strand, within mdtD at 1628.123 kb on + strand at 1628.123 kb on + strand at 1628.123 kb on + strand at 1628.123 kb on + strand at 1628.123 kb on + strand at 1628.123 kb on + strand at 1628.158 kb on + strand at 1628.158 kb on + strand at 1628.159 kb on - strand at 1628.164 kb on + strand at 1628.199 kb on + strand at 1628.199 kb on + strand at 1628.200 kb on - strand at 1628.203 kb on + strand at 1628.254 kb on + strand at 1628.255 kb on - strand at 1628.255 kb on - strand at 1628.356 kb on - strand at 1628.366 kb on + strand at 1628.366 kb on + strand at 1628.368 kb on + strand at 1628.368 kb on + strand at 1628.368 kb on + strand at 1628.368 kb on + strand at 1628.369 kb on - strand at 1628.369 kb on - strand at 1628.369 kb on - strand at 1628.369 kb on - strand at 1628.369 kb on - strand at 1628.369 kb on - strand at 1628.374 kb on + strand at 1628.481 kb on + strand at 1628.481 kb on + strand at 1628.482 kb on - strand at 1628.525 kb on + strand at 1628.525 kb on + strand at 1628.525 kb on + strand at 1628.526 kb on - strand at 1628.526 kb on - strand at 1628.560 kb on - strand at 1628.621 kb on + strand, within mdtC at 1628.621 kb on + strand, within mdtC at 1628.622 kb on - strand, within mdtC at 1628.622 kb on - strand, within mdtC at 1628.622 kb on - strand, within mdtC at 1628.638 kb on - strand, within mdtC at 1628.638 kb on - strand, within mdtC at 1628.648 kb on + strand, within mdtC at 1628.648 kb on + strand, within mdtC at 1628.652 kb on + strand, within mdtC at 1628.750 kb on + strand, within mdtC at 1628.751 kb on - strand, within mdtC at 1628.767 kb on + strand, within mdtC at 1628.776 kb on + strand, within mdtC at 1628.777 kb on - strand, within mdtC at 1628.777 kb on - strand, within mdtC at 1628.797 kb on + strand, within mdtC at 1628.798 kb on - strand, within mdtC at 1628.823 kb on + strand, within mdtC at 1629.099 kb on + strand, within mdtC at 1629.100 kb on - strand, within mdtC at 1629.100 kb on - strand, within mdtC at 1629.122 kb on - strand, within mdtC at 1629.142 kb on - strand, within mdtC at 1629.169 kb on + strand, within mdtC at 1629.169 kb on + strand, within mdtC at 1629.169 kb on + strand, within mdtC at 1629.169 kb on + strand, within mdtC at 1629.169 kb on + strand, within mdtC at 1629.169 kb on + strand, within mdtC at 1629.170 kb on - strand, within mdtC at 1629.170 kb on - strand, within mdtC at 1629.265 kb on + strand, within mdtC at 1629.265 kb on + strand, within mdtC at 1629.266 kb on - strand, within mdtC at 1629.266 kb on - strand, within mdtC at 1629.400 kb on + strand, within mdtC at 1629.401 kb on - strand, within mdtC at 1629.438 kb on + strand, within mdtC at 1629.438 kb on + strand, within mdtC at 1629.439 kb on - strand, within mdtC at 1629.439 kb on - strand, within mdtC at 1629.439 kb on - strand, within mdtC at 1629.557 kb on + strand, within mdtC at 1629.558 kb on - strand, within mdtC at 1629.558 kb on - strand, within mdtC at 1629.567 kb on - strand, within mdtC at 1629.700 kb on + strand, within mdtC at 1629.701 kb on - strand, within mdtC at 1629.763 kb on + strand, within mdtC at 1629.777 kb on + strand, within mdtC at 1629.777 kb on + strand, within mdtC at 1629.831 kb on + strand, within mdtC at 1629.831 kb on + strand, within mdtC at 1629.831 kb on + strand, within mdtC at 1629.832 kb on - strand, within mdtC at 1629.832 kb on - strand, within mdtC at 1630.252 kb on + strand, within mdtC at 1630.252 kb on + strand, within mdtC at 1630.252 kb on + strand, within mdtC at 1630.253 kb on - strand, within mdtC at 1630.253 kb on - strand, within mdtC at 1630.455 kb on - strand, within mdtC at 1630.455 kb on - strand, within mdtC at 1630.509 kb on - strand, within mdtC at 1630.509 kb on - strand, within mdtC at 1630.539 kb on + strand, within mdtC at 1630.642 kb on + strand, within mdtC at 1630.647 kb on + strand, within mdtC at 1630.647 kb on + strand, within mdtC at 1630.647 kb on + strand, within mdtC at 1630.648 kb on - strand, within mdtC at 1630.648 kb on - strand, within mdtC at 1630.648 kb on - strand, within mdtC at 1630.648 kb on - strand, within mdtC at 1630.650 kb on + strand, within mdtC at 1630.799 kb on + strand, within mdtC at 1630.799 kb on + strand, within mdtC at 1630.915 kb on + strand, within mdtC at 1630.916 kb on - strand, within mdtC at 1630.916 kb on - strand, within mdtC at 1630.921 kb on + strand, within mdtC at 1630.921 kb on + strand, within mdtC at 1630.921 kb on + strand, within mdtC at 1630.921 kb on + strand, within mdtC at 1630.922 kb on - strand, within mdtC at 1630.922 kb on - strand, within mdtC at 1630.939 kb on + strand, within mdtC at 1630.940 kb on - strand, within mdtC at 1630.967 kb on + strand, within mdtC at 1631.031 kb on + strand, within mdtC at 1631.049 kb on - strand, within mdtC at 1631.062 kb on - strand, within mdtC at 1631.096 kb on - strand at 1631.250 kb on - strand at 1631.250 kb on - strand at 1631.446 kb on - strand at 1631.446 kb on - strand at 1631.446 kb on - strand at 1631.628 kb on + strand at 1631.628 kb on + strand at 1631.629 kb on - strand at 1631.629 kb on - strand at 1631.630 kb on + strand at 1631.630 kb on + strand at 1631.631 kb on - strand at 1631.714 kb on - strand, within LU632_RS08690 at 1631.714 kb on - strand, within LU632_RS08690 at 1631.729 kb on - strand, within LU632_RS08690 at 1631.729 kb on - strand, within LU632_RS08690 at 1631.729 kb on - strand, within LU632_RS08690 at 1631.848 kb on - strand, within LU632_RS08690 at 1631.868 kb on + strand, within LU632_RS08690 at 1631.868 kb on + strand, within LU632_RS08690 at 1631.868 kb on + strand, within LU632_RS08690 at 1631.868 kb on + strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.869 kb on - strand, within LU632_RS08690 at 1631.996 kb on - strand, within LU632_RS08690 at 1632.240 kb on + strand, within LU632_RS08690 at 1632.240 kb on + strand, within LU632_RS08690 at 1632.276 kb on + strand, within LU632_RS08690 at 1632.276 kb on + strand, within LU632_RS08690 at 1632.276 kb on + strand, within LU632_RS08690 at 1632.277 kb on - strand, within LU632_RS08690 at 1632.277 kb on - strand, within LU632_RS08690 at 1632.379 kb on + strand, within LU632_RS08690 at 1632.380 kb on - strand, within LU632_RS08690 at 1632.380 kb on - strand, within LU632_RS08690 at 1632.382 kb on + strand, within LU632_RS08690 at 1632.383 kb on - strand, within LU632_RS08690
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1) remove 1,627,319 + mdtD LU632_RS08680 0.31 +0.2 1,627,323 + mdtD LU632_RS08680 0.31 +1.6 1,627,323 + mdtD LU632_RS08680 0.31 +1.2 1,627,324 - mdtD LU632_RS08680 0.31 +2.4 1,627,371 - mdtD LU632_RS08680 0.35 +0.9 1,627,377 + mdtD LU632_RS08680 0.35 -2.8 1,627,377 + mdtD LU632_RS08680 0.35 -1.9 1,627,379 + mdtD LU632_RS08680 0.36 -0.4 1,627,379 + mdtD LU632_RS08680 0.36 +2.1 1,627,386 - mdtD LU632_RS08680 0.36 -1.0 1,627,386 - mdtD LU632_RS08680 0.36 -0.1 1,627,467 + mdtD LU632_RS08680 0.42 +0.1 1,627,470 - mdtD LU632_RS08680 0.42 +2.6 1,627,470 - mdtD LU632_RS08680 0.42 -1.0 1,627,528 + mdtD LU632_RS08680 0.47 -0.4 1,627,529 - mdtD LU632_RS08680 0.47 -2.0 1,627,545 + mdtD LU632_RS08680 0.48 +0.1 1,627,546 - mdtD LU632_RS08680 0.48 -1.2 1,627,595 - mdtD LU632_RS08680 0.52 +1.0 1,627,661 - mdtD LU632_RS08680 0.57 +1.7 1,627,661 - mdtD LU632_RS08680 0.57 -2.0 1,627,795 + mdtD LU632_RS08680 0.67 -2.6 1,627,824 + mdtD LU632_RS08680 0.69 -0.8 1,627,897 + mdtD LU632_RS08680 0.75 -0.6 1,627,897 + mdtD LU632_RS08680 0.75 +2.1 1,627,898 - mdtD LU632_RS08680 0.75 -1.8 1,627,898 - mdtD LU632_RS08680 0.75 +0.1 1,627,908 + mdtD LU632_RS08680 0.76 -2.9 1,627,908 + mdtD LU632_RS08680 0.76 -2.8 1,627,908 + mdtD LU632_RS08680 0.76 +0.3 1,627,908 + mdtD LU632_RS08680 0.76 -0.4 1,627,908 + mdtD LU632_RS08680 0.76 -0.4 1,627,908 + mdtD LU632_RS08680 0.76 -0.5 1,627,908 + mdtD LU632_RS08680 0.76 -1.1 1,627,908 + mdtD LU632_RS08680 0.76 +0.7 1,627,909 - mdtD LU632_RS08680 0.76 +0.0 1,627,909 - mdtD LU632_RS08680 0.76 -0.8 1,627,909 - mdtD LU632_RS08680 0.76 -0.8 1,627,909 - mdtD LU632_RS08680 0.76 +1.0 1,627,909 - mdtD LU632_RS08680 0.76 +0.7 1,627,909 - mdtD LU632_RS08680 0.76 -1.0 1,627,909 - mdtD LU632_RS08680 0.76 +0.1 1,627,909 - mdtD LU632_RS08680 0.76 +0.5 1,627,909 - mdtD LU632_RS08680 0.76 +0.3 1,627,999 + mdtD LU632_RS08680 0.83 -1.8 1,628,123 + +0.6 1,628,123 + -0.2 1,628,123 + -1.4 1,628,123 + +2.2 1,628,123 + -3.7 1,628,123 + -0.5 1,628,158 + -0.6 1,628,158 + -2.0 1,628,159 - -0.1 1,628,164 + +0.6 1,628,199 + +1.5 1,628,199 + -0.0 1,628,200 - -0.4 1,628,203 + +0.7 1,628,254 + -0.9 1,628,255 - -0.4 1,628,255 - +2.7 1,628,356 - -2.4 1,628,366 + +0.5 1,628,366 + +0.1 1,628,368 + -1.0 1,628,368 + -1.8 1,628,368 + +0.4 1,628,368 + -0.3 1,628,369 - +1.6 1,628,369 - +0.6 1,628,369 - -2.6 1,628,369 - -1.6 1,628,369 - +0.9 1,628,369 - -1.8 1,628,374 + -1.3 1,628,481 + +1.5 1,628,481 + -0.0 1,628,482 - +1.0 1,628,525 + -0.4 1,628,525 + +0.3 1,628,525 + -0.4 1,628,526 - +0.0 1,628,526 - +1.3 1,628,560 - -3.4 1,628,621 + mdtC LU632_RS08685 0.10 -0.1 1,628,621 + mdtC LU632_RS08685 0.10 -0.1 1,628,622 - mdtC LU632_RS08685 0.10 +2.4 1,628,622 - mdtC LU632_RS08685 0.10 -0.1 1,628,622 - mdtC LU632_RS08685 0.10 -0.9 1,628,638 - mdtC LU632_RS08685 0.11 +1.0 1,628,638 - mdtC LU632_RS08685 0.11 -0.1 1,628,648 + mdtC LU632_RS08685 0.11 -0.3 1,628,648 + mdtC LU632_RS08685 0.11 -1.2 1,628,652 + mdtC LU632_RS08685 0.11 +1.1 1,628,750 + mdtC LU632_RS08685 0.14 +0.9 1,628,751 - mdtC LU632_RS08685 0.14 -0.4 1,628,767 + mdtC LU632_RS08685 0.15 +0.2 1,628,776 + mdtC LU632_RS08685 0.15 -0.4 1,628,777 - mdtC LU632_RS08685 0.15 -1.6 1,628,777 - mdtC LU632_RS08685 0.15 -2.1 1,628,797 + mdtC LU632_RS08685 0.16 -2.4 1,628,798 - mdtC LU632_RS08685 0.16 +0.2 1,628,823 + mdtC LU632_RS08685 0.17 -0.7 1,629,099 + mdtC LU632_RS08685 0.26 -0.0 1,629,100 - mdtC LU632_RS08685 0.26 -0.8 1,629,100 - mdtC LU632_RS08685 0.26 -0.4 1,629,122 - mdtC LU632_RS08685 0.26 -0.4 1,629,142 - mdtC LU632_RS08685 0.27 -0.2 1,629,169 + mdtC LU632_RS08685 0.28 -0.6 1,629,169 + mdtC LU632_RS08685 0.28 +1.2 1,629,169 + mdtC LU632_RS08685 0.28 +0.3 1,629,169 + mdtC LU632_RS08685 0.28 +1.2 1,629,169 + mdtC LU632_RS08685 0.28 +2.3 1,629,169 + mdtC LU632_RS08685 0.28 -0.1 1,629,170 - mdtC LU632_RS08685 0.28 -0.4 1,629,170 - mdtC LU632_RS08685 0.28 -0.6 1,629,265 + mdtC LU632_RS08685 0.31 -1.0 1,629,265 + mdtC LU632_RS08685 0.31 -2.9 1,629,266 - mdtC LU632_RS08685 0.31 -0.7 1,629,266 - mdtC LU632_RS08685 0.31 -0.4 1,629,400 + mdtC LU632_RS08685 0.35 -2.4 1,629,401 - mdtC LU632_RS08685 0.35 +0.1 1,629,438 + mdtC LU632_RS08685 0.37 +0.1 1,629,438 + mdtC LU632_RS08685 0.37 -0.1 1,629,439 - mdtC LU632_RS08685 0.37 +1.4 1,629,439 - mdtC LU632_RS08685 0.37 -0.4 1,629,439 - mdtC LU632_RS08685 0.37 -0.9 1,629,557 + mdtC LU632_RS08685 0.41 +0.3 1,629,558 - mdtC LU632_RS08685 0.41 +4.4 1,629,558 - mdtC LU632_RS08685 0.41 +3.7 1,629,567 - mdtC LU632_RS08685 0.41 -1.0 1,629,700 + mdtC LU632_RS08685 0.45 -1.3 1,629,701 - mdtC LU632_RS08685 0.45 +0.4 1,629,763 + mdtC LU632_RS08685 0.47 -0.7 1,629,777 + mdtC LU632_RS08685 0.48 -2.6 1,629,777 + mdtC LU632_RS08685 0.48 -0.1 1,629,831 + mdtC LU632_RS08685 0.49 +0.1 1,629,831 + mdtC LU632_RS08685 0.49 +0.1 1,629,831 + mdtC LU632_RS08685 0.49 +1.2 1,629,832 - mdtC LU632_RS08685 0.49 +0.4 1,629,832 - mdtC LU632_RS08685 0.49 +2.6 1,630,252 + mdtC LU632_RS08685 0.63 -3.4 1,630,252 + mdtC LU632_RS08685 0.63 +0.1 1,630,252 + mdtC LU632_RS08685 0.63 +1.5 1,630,253 - mdtC LU632_RS08685 0.63 +2.1 1,630,253 - mdtC LU632_RS08685 0.63 -1.4 1,630,455 - mdtC LU632_RS08685 0.70 -0.2 1,630,455 - mdtC LU632_RS08685 0.70 -0.0 1,630,509 - mdtC LU632_RS08685 0.72 +0.6 1,630,509 - mdtC LU632_RS08685 0.72 +1.4 1,630,539 + mdtC LU632_RS08685 0.72 +0.9 1,630,642 + mdtC LU632_RS08685 0.76 +0.5 1,630,647 + mdtC LU632_RS08685 0.76 -0.4 1,630,647 + mdtC LU632_RS08685 0.76 -0.8 1,630,647 + mdtC LU632_RS08685 0.76 -0.3 1,630,648 - mdtC LU632_RS08685 0.76 +1.3 1,630,648 - mdtC LU632_RS08685 0.76 -0.1 1,630,648 - mdtC LU632_RS08685 0.76 +0.5 1,630,648 - mdtC LU632_RS08685 0.76 +0.1 1,630,650 + mdtC LU632_RS08685 0.76 +0.1 1,630,799 + mdtC LU632_RS08685 0.81 +0.0 1,630,799 + mdtC LU632_RS08685 0.81 -0.4 1,630,915 + mdtC LU632_RS08685 0.85 -0.0 1,630,916 - mdtC LU632_RS08685 0.85 +0.3 1,630,916 - mdtC LU632_RS08685 0.85 -1.4 1,630,921 + mdtC LU632_RS08685 0.85 -0.7 1,630,921 + mdtC LU632_RS08685 0.85 +0.8 1,630,921 + mdtC LU632_RS08685 0.85 -0.2 1,630,921 + mdtC LU632_RS08685 0.85 +0.9 1,630,922 - mdtC LU632_RS08685 0.85 +1.2 1,630,922 - mdtC LU632_RS08685 0.85 -1.8 1,630,939 + mdtC LU632_RS08685 0.85 +1.2 1,630,940 - mdtC LU632_RS08685 0.86 -0.7 1,630,967 + mdtC LU632_RS08685 0.86 +0.6 1,631,031 + mdtC LU632_RS08685 0.88 +0.3 1,631,049 - mdtC LU632_RS08685 0.89 -0.4 1,631,062 - mdtC LU632_RS08685 0.89 +0.6 1,631,096 - +1.1 1,631,250 - -0.5 1,631,250 - -0.1 1,631,446 - -0.6 1,631,446 - -0.5 1,631,446 - -0.9 1,631,628 + -3.2 1,631,628 + -0.5 1,631,629 - -0.5 1,631,629 - -1.8 1,631,630 + +0.5 1,631,630 + +0.9 1,631,631 - -0.5 1,631,714 - LU632_RS08690 0.11 -0.1 1,631,714 - LU632_RS08690 0.11 +0.3 1,631,729 - LU632_RS08690 0.11 -1.8 1,631,729 - LU632_RS08690 0.11 +0.7 1,631,729 - LU632_RS08690 0.11 -0.5 1,631,848 - LU632_RS08690 0.15 +2.5 1,631,868 + LU632_RS08690 0.16 -0.4 1,631,868 + LU632_RS08690 0.16 -1.8 1,631,868 + LU632_RS08690 0.16 -0.4 1,631,868 + LU632_RS08690 0.16 -0.1 1,631,869 - LU632_RS08690 0.16 +0.7 1,631,869 - LU632_RS08690 0.16 +0.2 1,631,869 - LU632_RS08690 0.16 +1.5 1,631,869 - LU632_RS08690 0.16 +1.0 1,631,869 - LU632_RS08690 0.16 -0.2 1,631,869 - LU632_RS08690 0.16 -0.7 1,631,869 - LU632_RS08690 0.16 -1.8 1,631,869 - LU632_RS08690 0.16 -0.5 1,631,869 - LU632_RS08690 0.16 -2.2 1,631,869 - LU632_RS08690 0.16 -0.2 1,631,996 - LU632_RS08690 0.20 +1.0 1,632,240 + LU632_RS08690 0.27 -0.1 1,632,240 + LU632_RS08690 0.27 +0.2 1,632,276 + LU632_RS08690 0.29 +0.1 1,632,276 + LU632_RS08690 0.29 -0.9 1,632,276 + LU632_RS08690 0.29 +0.5 1,632,277 - LU632_RS08690 0.29 +1.6 1,632,277 - LU632_RS08690 0.29 -1.8 1,632,379 + LU632_RS08690 0.32 -1.0 1,632,380 - LU632_RS08690 0.32 -0.0 1,632,380 - LU632_RS08690 0.32 +0.1 1,632,382 + LU632_RS08690 0.32 +1.4 1,632,383 - LU632_RS08690 0.32 +0.5
Or see this region's nucleotide sequence