Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08105

Experiment: Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 1 (TE2-S-M5-P1)
1,515,550	+		LU632_RS08095	0.38	+0.9
1,515,581	-		LU632_RS08095	0.51	-2.1
1,515,581	-		LU632_RS08095	0.51	+0.2
1,515,581	-		LU632_RS08095	0.51	+0.1
1,515,581	-		LU632_RS08095	0.51	-1.0
1,515,581	-		LU632_RS08095	0.51	+0.3
1,515,727	-				+0.5
1,515,728	+				-0.3
1,515,780	+				-0.0
1,515,803	+				+0.8
1,516,073	+	elaB	LU632_RS08100	0.60	-1.4
1,516,074	-	elaB	LU632_RS08100	0.60	-0.5
1,516,074	-	elaB	LU632_RS08100	0.60	-1.1
1,516,077	-	elaB	LU632_RS08100	0.61	-0.1
1,516,077	-	elaB	LU632_RS08100	0.61	+2.8
1,516,080	-	elaB	LU632_RS08100	0.62	+0.2
1,516,099	+	elaB	LU632_RS08100	0.68	-0.5
1,516,100	-	elaB	LU632_RS08100	0.68	+0.6
1,516,233	+				-0.7
1,516,243	+				+1.7
1,516,256	+				-1.5
1,516,257	-				+0.5
1,516,409	-				+0.5
1,516,417	+				-3.0
1,516,488	+				+0.1
1,516,488	+				-1.8
1,516,496	+				-3.4
1,516,496	+				+1.3
1,516,496	+				+0.6
1,516,498	+				-0.1
1,516,531	-				-1.1
1,516,531	-				-1.2
1,516,599	-				-1.5
1,516,599	-				+0.3
1,516,665	+				+0.8
1,516,666	-				-1.8
1,516,812	+	menD	LU632_RS08105	0.17	+1.7
1,516,887	+	menD	LU632_RS08105	0.21	-1.0
1,516,887	+	menD	LU632_RS08105	0.21	+1.2
1,516,932	+	menD	LU632_RS08105	0.24	+0.6
1,516,933	-	menD	LU632_RS08105	0.24	+0.6
1,517,153	+	menD	LU632_RS08105	0.37	-0.6
1,517,412	+	menD	LU632_RS08105	0.53	-3.6
1,517,412	+	menD	LU632_RS08105	0.53	-1.4
1,517,413	-	menD	LU632_RS08105	0.53	-1.8
1,517,489	-	menD	LU632_RS08105	0.58	+1.4
1,517,517	+	menD	LU632_RS08105	0.59	-2.0
1,517,758	+	menD	LU632_RS08105	0.74	+0.8
1,517,759	-	menD	LU632_RS08105	0.74	-1.0
1,517,759	-	menD	LU632_RS08105	0.74	+0.6
1,517,959	-	menD	LU632_RS08105	0.86	+2.1
1,518,052	+				-0.6
1,518,053	-				+0.3
1,518,053	-				-0.0
1,518,053	-				-2.0
1,518,055	+				-2.4
1,518,140	+				-1.0
1,518,395	-	menH	LU632_RS08110	0.27	+0.2
1,518,395	-	menH	LU632_RS08110	0.27	+0.9
1,518,395	-	menH	LU632_RS08110	0.27	-1.3
1,518,471	+	menH	LU632_RS08110	0.37	+0.6
1,518,471	+	menH	LU632_RS08110	0.37	+0.6
1,518,472	-	menH	LU632_RS08110	0.37	+0.6
1,518,472	-	menH	LU632_RS08110	0.37	-2.8
1,518,472	-	menH	LU632_RS08110	0.37	-1.2
1,518,472	-	menH	LU632_RS08110	0.37	-0.9
1,518,475	-	menH	LU632_RS08110	0.37	-0.2
1,518,532	-	menH	LU632_RS08110	0.45	-0.2
1,518,548	+	menH	LU632_RS08110	0.47	-0.1
1,518,637	-	menH	LU632_RS08110	0.59	-2.3
1,518,662	+	menH	LU632_RS08110	0.62	+1.6
1,518,942	-				+2.5
1,518,942	-				-2.8
1,518,942	-				+0.4
1,518,951	+				-0.0
1,519,003	+				+0.5